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Poster communications Investigating the evolution of phototrophy in Pseudomonadota Timothée Salzat-Hervouette, Fatoumata Mangane, Sophie-Carole Chobert, Fabien Pierrel, Sophie S. Abby
ALPHY-AIEM, Feb 2025, Villeurbane, France. ⟨hal-04970921⟩
Conference papers MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes Sophie S. Abby
Symposium GT-SFBBM Archaea 2024, Oct 2024, Gif-sur Yvette, France. ⟨hal-04985182⟩
Conference papers Diversity of Quinones in Pseudomonadota: Focus on Ubiquinone biosynthesis and physiology under anaerobic conditions Fabien Pierrel
Bacterial Electron Transfer processes and their regulation, European Federation of Biotechnology, Mar 2024, Alicante (SPAIN), Spain. ⟨hal-04931621⟩
Journal articles Activation of Coq6p, a FAD Monooxygenase Involved in Coenzyme Q Biosynthesis, by Adrenodoxin Reductase/Ferredoxin Lucie Gonzalez, Samuel Chau-Duy Tam Vo, Bruno Faivre, Fabien Pierrel, Marc Fontecave, Djemel Hamdane, Murielle Lombard
ChemBioChem, 2024, 25 (5), ⟨10.1002/cbic.202300738⟩. ⟨hal-04728040v1⟩
Poster communications Deciphering the distribution of quinone biosynthetic pathways across Proteobacteria Sophie-Carole Chobert, Safa Berraies, Ludovic Pelosi, Ivan Junier, Fabien Pierrel, Sophie Abby
JOBIM, Jul 2022, Rennes, France. ⟨hal-04971902⟩
Conference papers Anaerobic ubiquinone biosynthetic pathway in Escherichia coli Katayoun Kazemzadeh, Sophie Abby, Sophie-Carole Chobert, Mahmoud Hajj Chehade, M Lombard, Chau Duy Tam Vo, Philippe Simon, Marc Fontecave, Barras Frédéric, Emmanuelle Bouveret, Rodrigo Arias-Cartin, Emmanuel Sechet, Corinne Loeuillet, Françoise Blanquet, Ludovic Pelosi, Fabien Pierrel
Société française de biochimie et biologie moléculaire, Jul 2022, Paris, France. ⟨hal-04976976⟩
Conference papers On the supramolecular organization, O2-dependency and evolution of CoQ biosynthesis in bacteria Fabien Pierrel
10th Conference of the International Coenzyme Q10 Association, International Coenzyme Q10 Association, May 2022, Hamburg, Germany. ⟨hal-04931618⟩
Journal articles Evolution of Bacterial Persistence to Antibiotics during a 50,000-Generation Experiment in an Antibiotic-Free Environment Hugo Mathé-Hubert, Rafika Amia, Mikaël Martin, Joël Gaffé, Dominique Schneider
Antibiotics, 2022, 11 (4), pp.451. ⟨10.3390/antibiotics11040451⟩. ⟨hal-04886110⟩
Conference papers Evolutionary scenario of substrate regio-selectivity for hydroxylases involved in ubiquinone production Sophie S. Abby
Rencontres Alphy / AIEM - Génomique évolutive, Bioinformatique, Alignement et Phylogénie, Mar 2022, Rennes, France. ⟨hal-04985168⟩
Preprints, Working Papers, ... circHiC: circular visualization of Hi-C data and integration of genomic data Ivan Junier, Nelle Varoquaux
2021. ⟨hal-02945275⟩
Conference papers Anaerobic UQ biosynthetic pathway in Escherichia coli: molecular aspects and physiological role Katayoun Kazemzadeh, Sophie Abby, Emmanuel Sechet, Bouveret Emmanuelle, Frédéric Barras, Ludovic Pelosi, Fabien Pierrel
Groupe Français de Bioénergétique (GFB), Sep 2021, Visio conference, France. ⟨hal-04977006⟩
Journal articles Toxoplasma LIPIN is essential in channeling host lipid fluxes through membrane biogenesis and lipid storage Sheena Dass, Serena Shunmugam, Laurence Berry, Christophe-Sebastien Arnold, Nicholas Katris, Samuel Duley, Fabien Pierrel, Marie-France Cesbron-Delauw, Yoshiki Yamaryo-Botté, Cyrille Botté
Nature Communications, 2021, 12 (1), pp.2813. ⟨10.1038/s41467-021-22956-w⟩. ⟨hal-05007579⟩
Journal articles Geochemical transition zone powering microbial growth in subsurface sediments Rui Zhao, José Mogollón, Sophie S. Abby, Christa Schleper, Jennifer Biddle, Desiree Roerdink, Ingunn Thorseth, Steffen Jørgensen
Proceedings of the National Academy of Sciences of the United States of America, 2020, pp.202005917. ⟨10.1073/pnas.2005917117⟩. ⟨hal-03079193⟩
Journal articles Genome wide transcriptomic analysis of the soil ammonia oxidizing archaeon Nitrososphaera viennensis upon exposure to copper limitation Carolina Reyes, Logan Hodgskiss, Melina Kerou, Thomas Pribasnig, Sophie S. Abby, Barbara Bayer, Stephan Kraemer, Christa Schleper
The International Society of Microbiologial Ecology Journal, 2020, 14 (11), pp.2659-2674. ⟨10.1038/s41396-020-0715-2⟩. ⟨hal-02992775⟩
Journal articles Ancestral Reconstructions Decipher Major Adaptations of Ammonia-Oxidizing Archaea upon Radiation into Moderate Terrestrial and Marine Environments Sophie S. Abby, Melina Kerou, Christa Schleper
mBio, 2020, 11 (5), ⟨10.1128/mBio.02371-20⟩. ⟨hal-02992748⟩
Journal articles The controversy on the ancestral arsenite oxidizing enzyme; deducing evolutionary histories with phylogeny and thermodynamics Julie Szyttenholm, Florence Chaspoul, Marielle Bauzan, Anne-Lise Ducluzeau, Mahmoud Hajj Chehade, Fabien Pierrel, Yann Denis, Wolfgang Nitschke, Barbara Schoepp-Cothenet
Biochimica biophysica acta (BBA) - Bioenergetics, 2020, 1861 (10), pp.148252. ⟨10.1016/j.bbabio.2020.148252⟩. ⟨hal-02896357⟩
Journal articles Physicochemical Evidence that Francisella FupA and FupB Proteins Are Porins Claire Siebert, Corinne Mercier, Donald K Martin, Patricia Renesto, Beatrice Schaack
International Journal of Molecular Sciences, 2020, 21 (15), pp.5496. ⟨10.3390/ijms21155496⟩. ⟨hal-03018927⟩
Journal articles The O2-independent pathway of ubiquinone biosynthesis is essential for denitrification in Pseudomonas aeruginosa Chau-Duy-Tam Vo, Julie Michaud, Sylvie Elsen, Bruno Faivre, Emmanuelle Bouveret, Frédéric Barras, Marc Fontecave, Fabien Pierrel, Murielle Lombard, Ludovic Pelosi
Journal of Biological Chemistry, 2020, 295 (27), pp.9021-9032. ⟨10.1074/jbc.RA120.013748⟩. ⟨pasteur-02746713⟩
Journal articles The Adenovirus Dodecahedron: Beyond the Platonic Story Solène Besson, Charles Vragniau, Emilie Vassal-Stermann, Marie Claire Dagher, Pascal Fender
Viruses, 2020, 12 (7), pp.718. ⟨10.3390/v12070718⟩. ⟨hal-02993412⟩
Journal articles PasT of Escherichia coli sustains antibiotic tolerance and aerobic respiration as a bacterial homolog of mitochondrial Coq10 Cinzia Fino, Martin Vestergaard, Hanne Ingmer, Fabien Pierrel, Kenn Gerdes, Alexander Harms
MicrobiologyOpen, 2020, ⟨10.1002/mbo3.1064⟩. ⟨hal-02896344⟩
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