HAL publications access
Journal articles Exploring the human small intestinal luminal microbiome via a newly developed ingestible sampling device Alexandre Tronel, Morgane Roger-Margueritat, Caroline Plazy, Salomé Biennier, Anthony Craspay, Ipsita Mohanty, Stéphanie Cools Portier, Manolo Laiola, Guus Roeselers, Nicolas Mathieu, Marianne Hupe, Pieter C Dorrestein, Jean-Pierre Alcaraz, Donald Martin, Philippe Cinquin, Anne-Sophie Silvent, Joris Giai, Marion Proust, Thomas Soranzo, Elena Buelow, Audrey Le Gouellec
ISME Communications, 2026, 5 (1), ⟨10.1093/ismeco/ycaf224⟩. ⟨hal-05467365⟩
Journal articles Penalized likelihood optimization for censored missing value imputation in proteomics Lucas Etourneau, Laura Fancello, Samuel Wieczorek, Nelle Varoquaux, Thomas Burger
Biostatistics, 2025, 26 (1), ⟨10.1093/biostatistics/kxaf006⟩. ⟨hal-05002295⟩
Patents Procédé de reconstruction d’un objet par tomographie à rayons X comprenant un calcul de termes de régularisation Matthieu Laurendeau, Frederic Jolivet, Laurent Desbat, Guillaume Bernard, Sébastien Gorges, Simon Rit
France, Patent n° : FR2307316. 2025. ⟨hal-04885299⟩
Journal articles Studies of the membrane-bound flavocytochrome MsrQ flavin mononucleotide (FMN)-binding site reveal an unexpected ubiquinone cofactor Philippe Carpentier, Fabien Pierrel, Nicolas Duraffourg, Bruno Guigliarelli, Mahmoud Hajj Chehade, Laura Flandrin, Christian Basset, Christelle Caux, Stephane Torelli, Vincent Nivière
FEBS Journal, 2025, 292 (20), pp.5491-5505. ⟨10.1111/febs.70162⟩. ⟨hal-05106061⟩
Journal articles hdmax2, an R package to perform high dimension mediation analysis Florence Pittion, Basile Jumentier, Aurélie Nakamura, Johanna Lepeule, Olivier François, Magali Richard
Peer Community Journal, 2025, 5, pp.e107. ⟨10.24072/pcjournal.564⟩. ⟨hal-04658960v5⟩
Journal articles Identification of an extraction protocol from dried blood spots for untargeted metabolomics: application to phenylketonuria Sébastien Vézirian, Valérie Cunin, Carlos Dias, Audrey Le Gouellec, Patrice Faure, Bertrand Toussaint, Christelle Corne, Caroline Plazy
Metabolomics, 2025, 21 (5), pp.141. ⟨10.1007/s11306-025-02338-9⟩. ⟨hal-05467410⟩
Journal articles A Systematic Review of the Diagnostic Accuracy of Deep Learning Models for the Automatic Detection, Localization, and Characterization of Clinically Significant Prostate Cancer on Magnetic Resonance Imaging Sébastien Molière, Dimitri Hamzaoui, Guillaume Ploussard, Romain Mathieu, Gaëlle Fiard, Michael Baboudjian, benjamin granger, Morgan Roupret, Hervé Delingette, Raphaële Renard-Penna
European Urology Oncology, 2025, 8 (4), pp.1182-1202. ⟨10.1016/j.euo.2024.11.001⟩. ⟨hal-04827079⟩
Journal articles Untargeted and semi-targeted metabolomics approach for profiling small intestinal and fecal metabolome using high-resolution mass spectrometry Alexandre Tronel, Morgane Roger-Margueritat, Caroline Plazy, Valérie Cunin, Ipsita Mohanty, Pieter Dorrestein, Thomas Soranzo, Audrey Le Gouellec
Metabolomics, 2025, 21 (4), pp.84. ⟨10.1007/s11306-025-02288-2⟩. ⟨hal-05467454⟩
Journal articles Environmental and clinical impacts of antibiotics’ sub-minimum inhibitory concentrations on the development of resistance in acinetobacter baumannii Bipin Yadav, Dilip Karad, Kiran Kharat, Nilesh Makwana, Anjali Jaiswal, Richa Chawla, Meenakshi Mani, Hathorkhi Boro, Prashant Joshi, Dhanraj Kamble, Corinne Mercier, Arun Kharat
Science of the Total Environment, 2025, 979, pp.179521. ⟨10.1016/j.scitotenv.2025.179521⟩. ⟨hal-05467317⟩
Journal articles Tocilizumab-Based Treatment of Microvascular Inflammation in Kidney Transplant Recipients: A Retrospective Study Johan Noble, Giorgia Comai, Valeria Corredetti, Reda Laamech, Celine Dard, Thomas Jouve, Diane Giovannini, Audrey Le Gouellec, Shivani Wadnerkar, Paolo Cravedi, Della Apuzzo, Daniele Vetrano, Marco Busutti, Chiara Abenavoli, Paolo Malvezzi, Lionel Pe Rostaing, Gaetano Lamanna
Transplant International, 2025, 38, ⟨10.3389/ti.2025.14502⟩. ⟨hal-05467450⟩
Journal articles Holo‐omics disentangle drought response and biotic interactions among plant, endophyte and pathogen Peilin Chen, Qingyi Yu, Cong Wang, Liliam Montoya, Patrick West, Ling Xu, Nelle Varoquaux, Benjamin Cole, Kim Hixson, Young‐mo Kim, Ling Liu, Baodan Zhang, Jie Zhang, Baiyang Li, Elizabeth Purdom, John Vogel, Christer Jansson, Robert Hutmacher, Jeffery Dahlberg, Devin Coleman-Derr, Peggy Lemaux, John Taylor, Cheng Gao
New Phytologist, 2025, 246 (6), pp.2702-2717. ⟨10.1111/nph.70155⟩. ⟨hal-05467384⟩
Journal articles LymphoTEC: a Retrospective Real-World Study on Lymphocyte Reconstitution After Lymphopenia in Patients with Multiple Sclerosis Treated with Dimethyl Fumarate in France Jérôme de Sèze, Pierre Labauge, Roland Liblau, Mikel Martinez, Thibault Moreau, Laurent Suchet, Patrick Vermersch, Sandra Vukusic, Guillaume Mathey, Laure Michel, Jonathan Ciron, Aurelie Ruet, Elisabeth Maillart, Helene Zephir, Caroline Papeix, Gilles Defer, Mikael Cohen, David Axel Laplaud, Eric Berger, Pierre Clavelou, Eric Thouvenot, Olivier Heinzlef, Jean Pelletier, Claire Giannesini, Olivier Casez, Bertrand Bourre, Abir Wahab, Laurent Magy, Jean-Philippe Camdessanché, Inès Doghri, Céline Labeyrie, Karolina Hankiewicz, Jean-Philippe Neau, Corinne Pottier, Pamela Dobay, Hanyue Li, Seth Levin, Marilyn Gros, Marta Ruiz, Fabien Rollot
Advances in Therapy, 2025, 42 (4), pp.1760-1782. ⟨10.1007/s12325-024-03092-5⟩. ⟨hal-04978826⟩
Journal articles Jacketed telemetry in rats: a novel non-invasive method for cardiorespiratory phenotyping during treadmill exercise Stéphane Tanguy, Agathe Cambier, Leandro Fontana-Pires, Timothé Flenet, Charles Eynard, Julie Fontecave-Jalon, Pierre-Yves Gumery, François Boucher
Laboratory Animals, 2025, 59 (2), pp.215-225. ⟨10.1177/00236772241259857⟩. ⟨hal-04715766⟩
Journal articles Les territoires mouvants du voyage mental Manik Bhattacharjee, Thomas Christen, Chantal Delon-Martin, Michel Dojat, Etienne Hugues, Yves Goldberg, Christian Graff, Anne Laurençon, Lydia Oujamaa, Karin Pernet-Gallay, Laurent Vercueil
Médecine/Sciences, 2025, 41 (3), pp.239-245. ⟨10.1051/medsci/2025022⟩. ⟨hal-05000483⟩
Journal articles Antibiotics at life’s end: key role in treating end-of-life pneumonia? Thibaut Fraisse, Alain Putot, Emmanuel Forestier, Gaëtan Gavazzi, Petra Vayne-Bossert, Claire Roubaud-Baudron, Virginie Prendki
Expert Review of Respiratory Medicine, 2025, pp.1-8. ⟨10.1080/17476348.2025.2479613⟩. ⟨hal-05003673⟩
Preprints, Working Papers, ... Hydrodynamics in a villi-patterned channel due to pendular-wave activity Rohan Vernekar, Faisal Ahmad, Martin Garic, Dácil Idaira Yánez Martín, Claude Loverdo, Stéphane Tanguy, Clément de Loubens
2025. ⟨hal-04988881⟩
Journal articles Hereditary Angioedema with Normal C1 Inhibitor: an Updated International Consensus Paper on Diagnosis, Pathophysiology, and Treatment Bruce Zuraw, Konrad Bork, Laurence Bouillet, Sandra Christiansen, Henriette Farkas, Anastasios Germenis, Anete Grumach, Allen Kaplan, Alberto López-Lera, Markus Magerl, Marc Riedl, Adil Adatia, Aleena Banerji, Stephen Betschel, Isabelle Boccon-Gibod, Maria Bova, Henrik Balle Boysen, Teresa Caballero, Mauro Cancian, Anthony Castaldo, Danny Cohn, Deborah Corcoran, Christian Drouet, Atsushi Fukunaga, Michihiro Hide, Constance Katelaris, Philip Li, Hilary Longhurst, Jonny Peter, Fotis Psarros, Avner Reshef, Bruce Ritchie, Christine Selva, Andrea Zanichelli, Marcus Maurer
Clinical Reviews in Allergy & Immunology, 2025, 68 (1), pp.24. ⟨10.1007/s12016-025-09027-4⟩. ⟨hal-04997284⟩
Preprints, Working Papers, ... Cytosolic acetyl-CoA synthetase (ACSS2) does not generate butyryl- and crotonyl-CoA Nour Zeaiter, Laura Belot, Valérie Cunin, Roland Abi Nahed, Malgorzata Tokarska-Schlattner, Audrey Le Gouellec, Carlo Petosa, Saadi Khochbin, Uwe Schlattner
2025. ⟨hal-04982395⟩
Preprints, Working Papers, ... Multi-method quantification of acetyl-CoA and further acyl-CoA species in normal and ischemic rat liver Malgorzata Tokarska-Schlattner, Nour Zeaiter, Valérie Cunin, Stéphane Attia, Cécile Meunier, Laurence Kay, Amel Achouri, Edwige Hiriart-Bryant, Karine Couturier, Cindy Tellier, Abderrafek El Harras, Bénédicte Elena-Herrmann, Saadi Khochbin, Audrey Le Gouellec, Uwe Schlattner
2025. ⟨hal-04982407⟩
Software medepir : MEthylation DEconvoluation PIpeline in R Magali Richard, Clémentine Decamps, Florian Privé, Michael Gb Blum
2025, ⟨swh:1:dir:efd827b7099bac94dab11520f6e5f77d2990ef90;origin=https://github.com/bcm-uga/medepir;visit=swh:1:snp:52844a39c5dafa3e89447e3a12266b2e3a0be444;anchor=swh:1:rev:2fdd8d6a151cdadf42884f32c3f4bf69527cb9bd⟩. ⟨hal-04979641⟩
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