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Journal articles The evolution of protein secretion systems by co-option and tinkering of cellular machineries Rémi Denise, Sophie S. Abby, Eduardo Rocha
Trends in Microbiology, 2020, 28 (5), pp.372-386. ⟨10.1016/j.tim.2020.01.005⟩. ⟨pasteur-02626815⟩
Journal articles Intracellular Positioning Systems Limit the Entropic Eviction of Secondary Replicons Toward the Nucleoid Edges in Bacterial Cells Julie Dauverd -Girault, Charlène Planchenault, Marine C Pons, Caroline Schiavon, Patricia Siguier, Jérôme Rech, Catherine Guynet, Julie Dauverd-Girault, Jean Cury, Eduardo P C Rocha, Ivan Junier, François Cornet, Olivier Espéli
Journal of Molecular Biology, 2020, 432 (3), pp.745-761. ⟨10.1016/j.jmb.2019.11.027⟩. ⟨hal-02392007⟩
Journal articles Serotyping, host genes and cytokines response in human ocular toxoplasmosis Luz Eliana Mantilla-Muriel, Alejandro Hernández-De-Los-Ríos, Mónica Rincón, Alejandra De-La-Torre, Mateo Murillo-León, Néstor Cardona, Marie France Cesbron-Delauw, Corinne Mercier, Juan Carlos Sepúlveda-Arias, Jorge Enrique Gomez-Marin
Microbial Pathogenesis, 2020, 148, pp.104465. ⟨10.1016/j.micpath.2020.104465⟩. ⟨hal-03735939⟩
Journal articles A pipeline to analyse time-course gene expression data Nelle Varoquaux, Elizabeth Purdom
F1000Research, 2020, 9, pp.1447. ⟨10.12688/f1000research.27262.1⟩. ⟨hal-03375800⟩
Journal articles Modeling supercoiled DNA interacting with an anchored cluster of proteins: towards a quantitative estimation of chromosomal DNA supercoiling Jean-Charles Walter, Thibaut Lepage, Jérôme Dorignac, Frédéric Geniet, Andrea Parmeggiani, John Palmeri, Jean-Yves Bouet, Ivan Junier
International Journal of Antimicrobial Agents, 2020, 56 (6), pp.106153. ⟨10.48550/arXiv.2002.00111⟩. ⟨hal-04851307⟩
Journal articles Advances in bacterial pathways for the biosynthesis of ubiquinone Sophie S. Abby, Katayoun Kazemzadeh, Charles Vragniau, Ludovic Pelosi, Fabien Pierrel
Biochimica biophysica acta (BBA) - Bioenergetics, 2020, 1861 (11), pp.148259. ⟨10.1016/j.bbabio.2020.148259⟩. ⟨hal-02944115⟩
Journal articles The amino-terminal region of dense granule protein 6 of Toxoplasma gondii stimulates IFN-γ production by microglia Qila Sa, Corinne Mercier, Marie-France Cesbron-Delauw, Yasuhiro Suzuki
Microbes and Infection, 2020, ⟨10.1016/j.micinf.2019.12.003⟩. ⟨hal-02470435⟩
Journal articles Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses Nelle Varoquaux, Benjamin Cole, Cheng Gao, Grady Pierroz, Christopher Baker, Dhruv Patel, Mary Madera, Tim Jeffers, Joy Hollingsworth, Julie Sievert, Yuko Yoshinaga, Judith Owiti, Vasanth Singan, Stephanie Degraaf, Ling Xu, Matthew Blow, Maria Harrison, Axel Visel, Christer Jansson, Krishna Niyogi, Robert Hutmacher, Devin Coleman-Derr, Ronan O’malley, John Taylor, Jeffery Dahlberg, John Vogel, Peggy Lemaux, Elizabeth Purdom
Proceedings of the National Academy of Sciences of the United States of America, 2019, 116 (52), pp.27124-27132. ⟨10.1073/pnas.1907500116⟩. ⟨hal-02945234⟩
Journal articles Vitamin K2 cannot substitute Coenzyme Q10 as electron carrier in the mitochondrial respiratory chain of mammalian cells Cristina Cerqua, Alberto Casarin, Fabien Pierrel, Luis Vazquez Fonseca, Giampiero Viola, Leonardo Salviati, Eva Trevisson
Scientific Reports, 2019, 9 (1), ⟨10.1038/s41598-019-43014-y⟩. ⟨hal-02324041⟩
Book sections Identifying Conjugative Plasmids and Integrative Conjugative Elements with CONJscan Jean Cury, Sophie S. Abby, Olivia Doppelt-Azeroual, Bertrand Néron, Eduardo P C Rocha
Fernando de la Cruz. Horizontal Gene Transfer : Methods and Protocols, Springer Science; Business Media, pp.265-283, 2019, 978-1-4939-9876-0. ⟨10.1007/978-1-4939-9877-7_19⟩. ⟨pasteur-02867882⟩
Conference papers In silico and in vivo study of the regioselectivity of hydroxylases involved in proteobacterial ubiquinone biosynthesis Katayoun Kazemzadeh, Ludovic Pelosi, Clothilde Chenal, Sophie Abby, Jeremy Esque, Isabelle André, Ivan Junier, Fabien Pierrel
Groupe Français de Bioénergétique, Sep 2019, Autrans (Grenoble), France. ⟨hal-04977011⟩
Journal articles Toxoplasma gondii Parasitophorous Vacuole Membrane-Associated Dense Granule Proteins Orchestrate Chronic Infection and GRA12 Underpins Resistance to Host Gamma Interferon Barbara Fox, Rebekah Guevara, Leah Rommereim, Alejandra Falla, Valéria Bellini, Graciane Petre, Camille Rak, Viviana Cantillana, Jean-François Dubremetz, Marie-France Cesbron-Delauw, Gregory Taylor, Corinne Mercier, David Bzik
mBio, 2019, 10 (4), ⟨10.1128/mBio.00589-19⟩. ⟨hal-02172732⟩
Journal articles A polymer model of bacterial supercoiled DNA including structural transitions of the double helix Thibaut Lepage, Ivan Junier
Physica A: Statistical Mechanics and its Applications, 2019, 527, pp.121196. ⟨10.1016/j.physa.2019.121196⟩. ⟨hal-02283136⟩
Journal articles Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility Rémi Denise, Sophie S. Abby, Eduardo P. C. Rocha
PLoS Biology, 2019, 17 (7), pp.e3000390. ⟨10.1371/journal.pbio.3000390⟩. ⟨pasteur-02263349⟩
Journal articles Ammonia Oxidation by the Arctic Terrestrial Thaumarchaeote Candidatus Nitrosocosmicus arcticus Is Stimulated by Increasing Temperatures Ricardo Alves, Melina Kerou, Anna Zappe, Romana Bittner, Sophie S. Abby, Heiko Schmidt, Kevin Pfeifer, Christa Schleper
Frontiers in Microbiology, 2019, 10, ⟨10.3389/fmicb.2019.01571⟩. ⟨hal-02313925⟩
Journal articles Vanillic Acid Restores Coenzyme Q Biosynthesis and ATP Production in Human Cells Lacking COQ6 Manuel Acosta Lopez, Eva Trevisson, Marcella Canton, Luis Vazquez-Fonseca, Valeria Morbidoni, Elisa Baschiera, Chiara Frasson, Ludovic Pelosi, Bérengère Rascalou, Maria Andrea Desbats, María Alcázar-Fabra, José Julián Ríos, Alicia Sánchez-García, Giuseppe Basso, Placido Navas, Fabien Pierrel, Gloria Brea-Calvo, Leonardo Salviati
Oxidative Medicine and Cellular Longevity, 2019, 2019, pp.1-11. ⟨10.1155/2019/3904905⟩. ⟨hal-02323996⟩
Journal articles Plasticity of Promoter-Core Sequences Allows Bacteria to Compensate for the Loss of a Key Global Regulatory Gene Otmane Lamrabet, Jacqueline A Plumbridge, Mikaël Martin, Richard Lenski, Dominique Schneider, Thomas Hindré
Molecular Biology and Evolution, 2019, 36 (6), pp.1121-1133. ⟨10.1093/molbev/msz042⟩. ⟨hal-02283119⟩
Journal articles Changes in Intrinsic Antibiotic Susceptibility during a Long-Term Evolution Experiment with Escherichia coli Otmane Lamrabet, Mikaël Martin, Richard Lenski, Dominique Schneider
mBio, 2019, 10 (2), ⟨10.1128/mBio.00189-19⟩. ⟨hal-02283128⟩
Journal articles The dense granule protein 8 (GRA8) is a component of the sub-pellicular cytoskeleton in Toxoplasma gondii Rubén Darío Díaz-Martín, Corinne Mercier, Carmen Gómez de León, Ricardo Mondragón González, Sirenia González Pozos, Emmanuel Ríos-Castro, Raúl Arguello García, Barbara Fox, David Bzik, Ricardo Mondragón Flores
Parasitology Research, 2019, 118 (6), pp.1899-1918. ⟨10.1007/s00436-019-06298-7⟩. ⟨hal-04818600⟩
Conference papers Biosynthesis of Ubiquinone without 02: how and why? Fabien Pierrel
«EVOLUTION, BIOGENESIS AND DYNAMICS OF ENERGY TRANSDUCING MEMBRANES», LABEX DYNAMO, Mar 2019, Paris, France. ⟨hal-04931615⟩
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