HAL publications access
Journal articles A Two-Enzyme Adaptive Unit within Bacterial Folate Metabolism A.F. Schober, A.D. Mathis, C. Ingle, J.O. Park, Lin Chen, J. D. Rabinowitz, Ivan Junier, Olivier Rivoire, K.A. Reynolds
Cell Reports, 2019, 27 (11), pp.3359-3370.e7. ⟨10.1016/j.celrep.2019.05.030⟩. ⟨hal-02283154⟩
Journal articles Ubiquinone Biosynthesis over the Entire O2 Range: Characterization of a Conserved O2-Independent Pathway Ludovic Pelosi, Chau-Duy-Tam Vo, Sophie Saphia Abby, Laurent Loiseau, Bérengère Rascalou, Mahmoud Hajj Chehade, Bruno Faivre, Mathieu Goussé, Clothilde Chenal, Nadia Touati, Laurent Binet, David Cornu, Cameron David Fyfe, Marc Fontecave, Frédéric Barras, Murielle Lombard, Fabien Pierrel
mBio, 2019, 10 (4), ⟨10.1128/mBio.01319-19⟩. ⟨hal-02183791⟩
Journal articles Reducing the ionizing radiation background does not significantly affect the evolution of Escherichia coli populations over 500 generations Nathanael Lampe, Pierre Marin, Marianne Coulon, Pierre Micheau, Lydia Maigne, David Sarramia, Fabrice Piquemal, Sébastien Incerti, David Biron, Camille Ghio, Télesphore Sime-Ngando, Thomas Hindré, Vincent Breton
Scientific Reports, 2019, 9 (1), pp.14891. ⟨10.1038/s41598-019-51519-9⟩. ⟨hal-02337251⟩
Journal articles Bacterial genome architecture shapes global transcriptional regulation by DNA supercoiling Bilal El houdaigui, Raphaël Forquet, Thomas Hindré, Dominique Schneider, William Nasser, Sylvie Reverchon, Sam Meyer
Nucleic Acids Research, 2019, 47 (11), pp.5648-5657. ⟨10.1093/nar/gkz300⟩. ⟨hal-02127001⟩
Journal articles A Soluble Metabolon Synthesizes the Isoprenoid Lipid Ubiquinone Mahmoud Hajj Chehade, Ludovic Pelosi, Cameron David Fyfe, Laurent Loiseau, Bérengère Rascalou, Sabine Brugière, Katayoun Kazemzadeh, Chau-Duy-Tam Vo, Lidia Ciccone, Laurent Aussel, Yohann Couté, Marc Fontecave, Frédéric Barras, Murielle Lombard, Fabien Pierrel
Cell Chemical Biology, 2019, 26 (4), pp.482-492.e7. ⟨10.1016/j.chembiol.2018.12.001⟩. ⟨hal-02071798⟩
Journal articles Non-linear frequency-dependent selection promotes long-term coexistence between bacteria species Noémie Harmand, Valentine Federico, Thomas Hindre, Thomas Lenormand
Ecology Letters, 2019, 22, pp.1192-1202. ⟨10.1111/ele.13276⟩. ⟨hal-02099952⟩
Journal articles Structural and functional studies of the metalloregulator Fur identify a promoter-binding mechanism and its role in Francisella tularensis virulence J. Pérard, S. Nader, M. Levert, L Arnaud, P. Carpentier, C. Siebert, F. Blanquet, C. Cavazza, P. Renesto, D. Schneider, M. Maurin, Jacques Covès, S. Crouzy, Isabelle Michaud-Soret
Communications Biology, 2018, 1 (1), ⟨10.1038/s42003-018-0095-6⟩. ⟨hal-02975690⟩
Patents Method for the in vitro detection of strains of Legionella pneumophila resistant to antibiotics Max Maurin, Dominique Schneider, Lubana Shadoud, Sophie Jarraud, Jean Francois Timsit, Jerome Etienne
France, Patent n° : US 10106858 B2 - US Patent App. 15/564,105. 2018. ⟨hal-02283240⟩
Conference papers Evolving Living Technologies-Insights from the EvoEvo project Guillaume Beslon, Santiago F Elena, Paulien Hogeweg, Dominique Schneider, Susan Stepney
SSBSE 2018 - 10th Symposium on Search-Based Software Engineering, Sep 2018, Montpellier, France. pp.46-62, ⟨10.1007/978-3-319-99241-9_2⟩. ⟨hal-01882636⟩
Journal articles Oral administration of viable Bifidobacterium pseudolongum strain Patronus modified colonic microbiota and increased mucus layer thickness in rat Irène Mangin, Flore Marques Dossou-Yovo, Christophe Lévêque, Marie-Vincent Dessoy, Olivier Sawoo, Antonia Suau, Philippe Pochart
FEMS Microbiology Ecology, 2018, 94 (11), ⟨10.1093/femsec/fiy177⟩. ⟨hal-01980169⟩
Journal articles High-content imaging assay to evaluate Toxoplasma gondii infection and proliferation: A multiparametric assay to screen new compounds Bastien Touquet, Léonie Pelissier, Pierre Cavailles, Wei Yi, Valeria Bellini, Corinne Mercier, Marie-France Cesbron-Delauw, Ahcène Boumendjel, Delphine Aldebert
PLoS ONE, 2018, 13 (8), pp.e0201678. ⟨10.1371/journal.pone.0201678⟩. ⟨hal-02007242⟩
Journal articles Robust Frankia phylogeny, species delineation and intraspecies diversity based on Multi-Locus Sequence Analysis (MLSA) and Single-Locus Strain Typing (SLST) adapted to a large sample size Adrien C Pozzi, Hector Bautista-Guerrero, Sophie S. Abby, Aude P Herrera-Belaroussi, Danis Abrouk, Philippe Normand, Frédéric Menu, Maria P Fernandez
Systematic and Applied Microbiology, 2018, 41 (4), pp.311-323. ⟨10.1016/j.syapm.2018.03.002⟩. ⟨hal-02313880⟩
Patents Implantable intestinal reactor Philippe Cinquin, Dominique Schneider, Max Maurin, Donald K Martin, Sarra El Ichi, Abdelkader Zebda, Jean-Pierre Alcaraz, Fabian Reche, Patrick Tuvignon, Jacques Thélu, Audrey Legouëllec, Bertrand Toussaint
France, Patent n° : US20180078746A1. 2018. ⟨hal-02010238⟩
Journal articles Identification of Protein Secretion Systems in Bacterial Genomes Using MacSyFinder. Sophie S. Abby, Eduardo P C Rocha
Methods in Molecular Biology, 2018, Bacterial protein secretion systems, 1615, pp.1-21. ⟨10.1007/978-1-4939-7033-9_1⟩. ⟨hal-01677379⟩
Journal articles Universal and idiosyncratic characteristic lengths in bacterial genomes Ivan Junier, Paul Frémont, Olivier Rivoire
Physical Biology, 2018, 15 (3), pp.035001. ⟨10.1088/1478-3975/aab4ac⟩. ⟨hal-01972786⟩
Journal articles Candidatus Nitrosocaldus cavascurensis, an Ammonia Oxidizing, Extremely Thermophilic Archaeon with a Highly Mobile Genome Sophie S. Abby, Michael Melcher, Melina Kerou, Mart Krupovic, Michaela Stieglmeier, Claudia Rossel, Kevin Pfeifer, Christa Schleper
Frontiers in Microbiology, 2018, 9, pp.28. ⟨10.3389/fmicb.2018.00028⟩. ⟨hal-01702026⟩
Journal articles Mutator genomes decay, despite sustained fitness gains, in a long-term experiment with bacteria Alejandro Couce, Larissa Viraphong Caudwell, Christoph Feinauer, Thomas Hindré, Jean-Paul Feugeas, Martin Weigt, Richard E. Lenski, Dominique Schneider, Olivier Tenaillon
Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (43), pp.E9026 - E9035. ⟨10.1073/pnas.1705887114⟩. ⟨hal-01653591⟩
Conference papers Environmental seasonality drives digital populations towards stable cross-feeding Charles Rocabert, Carole Knibbe, Jessika Consuegra, Dominique Schneider, Guillaume Beslon
European Conference on Artificial Life (ECAL), Sep 2017, Villeurbanne, France. ⟨hal-01569093⟩
Book sections Modeling Bacterial DNA: Simulation of Self-avoiding Supercoiled Worm-Like Chains Including Structural Transitions of the Helix Thibaut Lepage, Ivan Junier
The Bacterial Nucleoid, 2017. ⟨hal-01655027⟩
Journal articles Genetic Basis of Exploiting Ecological Opportunity During the Long-Term Diversification of a Bacterial Population Jessika Consuegra, Jessica Plucain, Joël Gaffé, Thomas Hindré, Dominique Schneider
Journal of Molecular Evolution, 2017, 85 (1-2), pp.26 - 36. ⟨10.1007/s00239-017-9802-z⟩. ⟨hal-01653588⟩
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