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Journal articles The UbiK protein is an accessory factor necessary for bacterial ubiquinone (UQ) biosynthesis and forms a complex with the UQ biogenesis factor UbiJ Laurent Loiseau, Cameron Fyfe, Laurent Aussel, Mahmoud Hajj Chehade, Sara B. Hernández, Bruno Faivre, Djemel Hamdane, Caroline Mellot-Draznieks, Bérengère Rascalou, Ludovic Pelosi, Christophe Velours, David Cornu, Murielle Lombard, Josep Casadesús, Fabien Pierrel, Marc Fontecave, Frédéric Barras
Journal of Biological Chemistry, 2017, 292 (28), pp.11937 - 11950. ⟨10.1074/jbc.M117.789164⟩. ⟨hal-01615493⟩
Journal articles Isee-resistance : using in silico experimental evolution to sensitize providers on antibiotic resistance Guillaume Beslon, Dominique Schneider
Antimicrobial Resistance and Infection Control, 2017, Abstracts from the 4th International Conference on Prevention & Infection Control (ICPIC 2017), 6(Suppl 3) (52), pp.2. ⟨hal-01569262⟩
Journal articles Beware batch culture: Seasonality and niche construction predicted to favor bacterial adaptive diversification Charles Rocabert, Carole Knibbe, Jessika Consuegra, Dominique Schneider, Guillaume Beslon
PLoS Computational Biology, 2017, 13 (3), e1005459 (32 p.). ⟨10.1371/journal.pcbi.1005459.s006⟩. ⟨hal-01508751⟩
Journal articles The COQ2 genotype predicts the severity of coenzyme Q 10 deficiency Maria Andrea Desbats, Valeria Morbidoni, Micol Silic-Benussi, Mara Doimo, Vincenzo Ciminale, Matteo Cassina, Sabrina Sacconi, Michio Hirano, Giuseppe Basso, Fabien Pierrel, Placido Navas, Leonardo Salviati, Eva Trevisson
Human Molecular Genetics, 2017, 25 (19), pp.4256 - 4265. ⟨10.1093/hmg/ddw257⟩. ⟨hal-01635280⟩
Journal articles Impact of Chemical Analogs of 4-Hydroxybenzoic Acid on Coenzyme Q Biosynthesis: From Inhibition to Bypass of Coenzyme Q Deficiency Fabien Pierrel
Frontiers in Physiology, 2017, 87, pp.80 - 80. ⟨10.3389/fphys.2017.00436⟩. ⟨hal-01583835⟩
Theses Ecological and molecular bases of adaptive diversification in Escherichia coli Jessika Consuegra Bonilla
Microbiology and Parasitology. Université Grenoble Alpes, 2016. English. ⟨NNT : 2016GREAV090⟩. ⟨tel-01626007⟩
Journal articles Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers Melina Kerou, Pierre Offre, Luis Valledor, Sophie S. Abby, Michael Melcher, Matthias Nagler, Wolfram Weckwerth, Christa Schleper
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (49), pp.E7937-E7946. ⟨10.1073/pnas.1601212113⟩. ⟨hal-03412776⟩
Journal articles Contrasting effects of historical contingency on phenotypic and genomic trajectories during a two-step evolution experiment with bacteria Jessica Plucain, Antonia Suau, Stéphane Cruveiller, Claudine Médigue, Dominique Schneider, Mickael Le Gac
BMC Evolutionary Biology, 2016, 16 (1), ⟨10.1186/s12862-016-0662-8⟩. ⟨hal-01653387⟩
Reports EvoEvo Deliverable 6.8 Guillaume Beslon, Jonas Abernot, Santiago F. Elena, Dominique Schneider, Paulien Hogeweg, Susan Stepney, Christophe Rigotti
[Research Report] INRIA Grenoble - Rhône-Alpes. 2016. ⟨hal-01577187⟩
Patents Réacteur intestinal implantable Philippe Cinquin, Dominique Schneider, Max Maurin, Donald K Martin, Sarra El Ichi, Abdelkader Zebda, Jean-Pierre Alcaraz, Fabian Reche, Patrick Tuvignon
France, Patent n° : FR3034307. 2016. ⟨hal-02010289⟩
Reports EvoEvo Deliverable 1.5 Dominique Schneider, Guillaume Beslon, José-Luis Carrasco, Santiago F. Elena, Otmane Lamrabet, A. Willemsen
. [Research Report] INRIA Grenoble - Rhône-Alpes. 2016. ⟨hal-01577130⟩
Reports EvoEvo Deliverable 1.6 Dominique Schneider, Guillaume Beslon, Santiago F. Elena, Otmane Lamrabet
. [Research Report] INRIA Grenoble - Rhône-Alpes. 2016. ⟨hal-01577131⟩
Journal articles Mechanistic Details of Early Steps in Coenzyme Q Biosynthesis Pathway in Yeast Laurie-Anne Payet, Mélanie Leroux, John  C. Willison, Akio Kihara, Ludovic Pelosi, Fabien Pierrel
Cell Chemical Biology, 2016, 23 (10), pp.1241 - 1250. ⟨10.1016/j.chembiol.2016.08.008⟩. ⟨hal-01424510⟩
Conference papers In Silico Experimental Evolution Highlights the Influence of Environmental Seasonality on Bacterial Diversification Charles Rocabert, Carole Knibbe, Jessika Consuegra, Dominique Schneider, Guillaume Beslon
2nd EvoEvo Workshop, satellite workshop of CCS2016, Sep 2016, Amsterdam, Netherlands. ⟨hal-01375677⟩
Journal articles Evolution of Ubiquinone Biosynthesis: Multiple Proteobacterial Enzymes with Various Regioselectivities To Catalyze Three Contiguous Aromatic Hydroxylation Reactions Ludovic Pelosi, Anne-Lise Ducluzeau, Laurent Loiseau, Frédéric Barras, Dominique Schneider, Ivan Junier, Fabien Pierrel
mSystems, 2016, 1 (4), pp.00091-16. ⟨10.1128/mSystems.00091-16⟩. ⟨hal-01424513⟩
Journal articles Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment. Tobias Grosskopf, Jessica Consuegra, Joël Gaffé, John Willison, Richard E Lenski, Orkun S. Soyer, Dominique Schneider
BMC Evolutionary Biology, 2016, 16 (1), pp.163. ⟨10.1186/s12862-016-0733-x⟩. ⟨hal-01360095⟩
Journal articles Tempo and mode of genome evolution in a 50,000-generation experiment Olivier Tenaillon, Jeffrey E. Barrick, Noah Ribeck, Daniel E. Deatherage, Jeffrey L. Blanchard, Aurko Dasgupta, Gabriel C. Wu, Sébastien Wielgoss, Stéphane Cruveiller, Claudine Médigue, Dominique Schneider, Richard E. Lenski
Nature, 2016, 536 (7615), pp.165 - 170. ⟨10.1038/nature18959⟩. ⟨hal-01653393⟩
Journal articles Phenotypes Associated with Knockouts of Eight Dense Granule Gene Loci (GRA2-9) in Virulent Toxoplasma gondii. Leah M Rommereim, Valeria Bellini, Barbara A Fox, Graciane Pètre, Camille Rak, Bastien Touquet, Delphine Aldebert, Jean-François Dubremetz, Marie-France Cesbron-Delauw, Corinne Mercier, David J Bzik
PLoS ONE, 2016, 11 (7), pp.e0159306. ⟨10.1371/journal.pone.0159306⟩. ⟨hal-01539047⟩
Patents Réacteur intestinal implantable P. Cinquin, Dominique Schneider, Max Maurin, Donald K Martin, Sarra El Ichi, A Zebda, Jean-Pierre Alcaraz, Fabian Reche, Patrick Tuvignon, Jacques Thélu, Audrey Legouëllec, Bertrand Toussaint
France, N° de brevet: n° WO 2016/156612 A1. 2016. ⟨hal-02010232⟩
Journal articles Insights into the Mechanisms of Basal Coordination of Transcription Using a Genome-Reduced Bacterium Ivan Junier, E. besray Unal, Eva Yus, Verónica Lloréns-Rico, Luis Serrano
Cell Systems, 2016, 2 (6), pp.391 - 401. ⟨10.1016/j.cels.2016.04.015⟩. ⟨hal-01653839⟩
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