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Publications
TREE Team's publications
HAL publications access
Journal articles
Role of the Escherichia coli ubiquinone-synthesizing UbiUVT pathway in adaptation to changing respiratory conditions
Rodrigo Arias-Cartin, Katayoun Kazemzadeh Ferizhendi, Emmanuel Séchet, Ludovic Pelosi, Corinne Loeuillet, Fabien Pierrel, Frédéric Barras, Emmanuelle Bouveret
mBio, 2023, 14 (4), pp.e0329822. ⟨10.1128/mbio.03298-22⟩. ⟨hal-04213722v2⟩
Journal articles
Successional adaptive strategies revealed by correlating arbuscular mycorrhizal fungal abundance with host plant gene expression
Cheng Gao, Pierre-Emmanuel Courty, Nelle Varoquaux, Benjamin Cole, Liliam Montoya, Ling Xu, Elizabeth Purdom, John Vogel, Robert Hutmacher, Jeffery Dahlberg, Devin Colemann-Derr, Peggy Lemaux, John Taylor
Molecular Ecology, 2023, 32 (10), pp.2674-2687. ⟨10.1111/mec.16343⟩. ⟨hal-03375810⟩
Journal articles
MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes
Bertrand Néron, Rémi Denise, Charles Coluzzi, Marie Touchon, Eduardo P.C. Rocha, Sophie Abby
Peer Community Journal, 2023, 3, pp.e28. ⟨10.24072/pcjournal.250⟩. ⟨pasteur-04060331v2⟩
Journal articles
Stimulation of the immune system by a tumor antigen-bearing adenovirus-inspired VLP allows control of melanoma growth
Solène Besson, Emilie Boucher, David Laurin, Olivier Manches, Caroline Aspord, Dalil Hannani, Pascal Fender
Molecular Therapy - Methods and Clinical Development, 2023, 28, pp.76-89. ⟨10.1016/j.omtm.2022.12.003⟩. ⟨hal-03969612⟩
Journal articles
C-reactive protein and D-dimer in cerebral vein thrombosis: Relation to clinical and imaging characteristics as well as outcomes in a French cohort study
Paul Billoir, Virginie Siguret, Elisabeth Masson Fron, Ludovic Drouet, Isabelle Crassard, Raphaël Marlu, Marianne Barbieux-Guillot, Pierre-Emmanuel Morange, Emmanuelle Robinet, Catherine Metzger, Valérie Wolff, Elisabeth André-Kerneis, Frédéric Klapczynski, Brigitte Martin-Bastenaire, Fernando Pico, Fanny Menard, Emmanuel Ellie, Geneviève Freyburger, François Rouanet, Hong-An Allano, Gaëlle Godenèche, Guillaume Mourey, Thierry Moulin, Micheline Berruyer, Laurent Derex, Catherine Trichet, Gwénaëlle Runavot, Agnès Le Querrec, Fausto Viader, Sophie Cluet-Dennetiere, Thomas Tarek Husein, Magali Donnard, Francisco Macian-Montoro, Catherine Ternisien, Benoît Guillon, Sophie Laplanche, Mathieu Zuber, Jean-Yves Peltier, Philippe Tassan, Bertrand Roussel, Sandrine Canaple, Emilie Scavazza, Nicolas Gaillard, Aude Triquenot Bagan, Véronique Le Cam Duchez
Research and Practice in Thrombosis and Haemostasis, 2023, 7 (3), pp.100130. ⟨10.1016/j.rpth.2023.100130⟩. ⟨hal-04083689⟩
Journal articles
Inulin prebiotic reinforces host cancer immunosurveillance via ɣδ T cell activation
Emilie Boucher, Caroline Plazy, Mathias L Richard, Antonia Suau, Irène Mangin, Muriel Cornet, Delphine Aldebert, Bertrand Toussaint, Dalil Hannani
Frontiers in Immunology, 2023, 14, pp 1104224. ⟨10.3389/fimmu.2023.1104224⟩. ⟨hal-04075792⟩
Book sections
Unveiling the links between peptide identification and differential analysis FDR controls by means of a practical introduction to knockoff filters
Lucas Etourneau, Nelle Varoquaux, Thomas Burger
Statistical Analysis of Proteomic Data, 2426, Springer US, pp.1-24, 2023, Methods in Molecular Biology, ⟨10.1101/2021.08.20.454134⟩. ⟨hal-03373565⟩
Journal articles
Inulin Prebiotic Protects against Lethal Pseudomonas aeruginosa Acute Infection via γδ T Cell Activation
Emilie Boucher, Caroline Plazy, Audrey Le Gouellec, Bertrand Toussaint, Dalil Hannani
Nutrients, 2023, 15 (13), pp.3037. ⟨10.3390/nu15133037⟩. ⟨hal-04297026⟩
Journal articles
Extracellular Vesicles from 50,000 Generation Clones of the Escherichia coli Long-Term Evolution Experiment
David Laurin, Corinne Mercier, Nyamekye Quansah, Julie Suzanne Robert, Yves Usson, Dominique Schneider, Thomas Hindré, Béatrice Schaack
International Journal of Molecular Sciences, 2022, 23 (23), pp.14580. ⟨10.3390/ijms232314580⟩. ⟨hal-03893516⟩
Preprints, Working Papers, ...
Inulin prebiotic reinforces host cancer immunosurveillance via γδ T cell activation
Emilie Boucher, Caroline Plazy, Mathias Richard, Antonia Suau, Irène Mangin, Muriel Cornet, Delphine Aldebert, Bertrand Toussaint, Dalil Hannani
2022. ⟨hal-03857015⟩
Journal articles
Kappa Free Light Chain Biomarkers Are Efficient for the Diagnosis of Multiple Sclerosis: A Large Multicenter Cohort Study
Michael Levraut, Sabine Laurent-Chabalier, Xavier Ayrignac, Kévin Bigaut, Manon Rival, Sanae Squalli, Hélène Zéphir, Tifanie Alberto, Jean-David Pekar, Jonathan Ciron, Damien Biotti, Bénédicte Puissant-Lubrano, Jean-Philippe Camdessanché, Yannick Tholance, Olivier Casez, Bertrand Toussaint, Jeanne Marion, Thibault Moreau, Daniela Lakomy, Audrey Thomasset, Elisabeth Maillart, Delphine Sterlin, Aude Maurousset, Auriane Rocher, David Axel Laplaud, Edith Bigot-Corbel, Pierre-Olivier Bertho, Jean Pelletier, Joseph Boucraut, Pierre Labauge, Thierry Vincent, Jérôme de Sèze, Isabelle Jahn, Barbara Seitz-Polski, Eric Thouvenot, Christine Lebrun-Frenay
Neurology Neuroimmunology & Neuroinflammation, 2022, 10 (1), pp.e200049. ⟨10.1212/NXI.0000000000200049⟩. ⟨inserm-04003586⟩
Journal articles
Microbiota-derived extracellular vesicles detected in human blood from healthy donors
Béatrice Schaack, Thomas Hindré, Nyamekye Quansah, Dalil Hannani, Corinne Mercier, David Laurin
International Journal of Molecular Sciences, 2022, 23 (22), pp.13787. ⟨10.3390/ijms232213787⟩. ⟨hal-03893521⟩
Theses
Etude et application de nouvelles techniques d'imagerie et d'intelligence artificielle pour l'identification bactérienne
Julien Peyroux
Médecine humaine et pathologie. Université Grenoble Alpes [2020-..], 2022. Français. ⟨NNT : 2022GRALS026⟩. ⟨tel-03922686⟩
Journal articles
Manganese-driven CoQ deficiency
Jutta Diessl, Jens Berndtsson, Filomena Broeskamp, Lukas Habernig, Verena Kohler, Carmela Vazquez-Calvo, Arpita Nandy, Carlotta Peselj, Sofia Drobysheva, Ludovic Pelosi, F.-Nora Vögtle, Fabien Pierrel, Martin Ott, Sabrina Büttner
Nature Communications, 2022, 13 (1), pp.6061. ⟨10.1038/s41467-022-33641-x⟩. ⟨hal-03836582⟩
Journal articles
Electrochemical biosensing of glucose based on the enzymatic reduction of glucose
Thomas Soranzo, Awatef Ben Tahar, Ayman Chmayssem, Marc Zelsmann, Pankaj Vadgama, Jean-Luc Lenormand, Phillipe Cinquin, Donald K. Martin, Abdelkader Zebda
Sensors, 2022, 22 (19), pp.7105. ⟨10.3390/s22197105⟩. ⟨hal-03798340⟩
Journal articles
A case report of ulceroglandular tularemia caused by Francisella tularensis subsp. Holarctica in Iran
Saber Esmaeili, Ahmad Ghasemi, Parisa Esmaeili, Farshid Rezaie, Minoo Mohraz, Max Maurin, Ehsan Mostafavi
Acta Tropica, 2022, 234, pp.106570. ⟨10.1016/j.actatropica.2022.106570⟩. ⟨hal-03839541⟩
Journal articles
The [PSI + ] prion modulates cytochrome c oxidase deficiency caused by deletion of COX12
Pawan Kumar Saini, Hannah Dawitz, Andreas Aufschnaiter, Stanislav Bondarev, Jinsu Thom, Amélie Amblard, James Stewart, Nicolas Thierry-Mieg, Martin Ott, Fabien Pierrel
Molecular Biology of the Cell, 2022, ⟨10.1091/mbc.E21-10-0499⟩. ⟨hal-03836554⟩
Journal articles
Towards Molecular Understanding of the Functional Role of UbiJ-UbiK2 Complex in Ubiquinone Biosynthesis by Multiscale Molecular Modelling Studies
Romain Launay, Elin Teppa, Carla Martins, Sophie S Abby, Fabien Pierrel, Isabelle André, Jérémy Esque
International Journal of Molecular Sciences, 2022, 23 (18), ⟨10.3390/ijms231810323⟩. ⟨hal-03800688⟩
Journal articles
Fine Analysis of Lymphocyte Subpopulations in SARS-CoV-2 Infected Patients: Differential Profiling of Patients With Severe Outcome
Giovanna Clavarino, Corentin Leroy, Olivier Epaulard, Tatiana Raskovalova, Antoine Vilotitch, Martine Pernollet, Chantal Dumestre-Pérard, Federica Defendi, Marion Le Maréchal, Audrey Le Gouellec, Pierre Audoin, Jean-Luc Bosson, Pascal Poignard, Matthieu Roustit, Marie-Christine Jacob, Jean-Yves Cesbron
Frontiers in Immunology, 2022, 13, pp.889813. ⟨10.3389/fimmu.2022.889813⟩. ⟨hal-03808132⟩
Journal articles
What Is New in the Anti–Pseudomonas aeruginosa Clinical Development Pipeline Since the 2017 WHO Alert?
Sébastien Reig, Audrey Le Gouellec, Sophie Bleves
Frontiers in Cellular and Infection Microbiology, 2022, 12, ⟨10.3389/fcimb.2022.909731⟩. ⟨hal-03781230⟩
HAL publications access
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