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Journal articles Non-vaccinal prophylaxis of tularemia Max Maurin, Aurélie Hennebique, Camille Brunet, Léa Pondérand, Isabelle Pelloux, Sandrine Boisset, Yvan Caspar
Frontiers in Microbiology, 2024, 15, ⟨10.3389/fmicb.2024.1507469⟩. ⟨hal-04837509⟩
Preprints, Working Papers, ... Targeting fungal BET bromodomains as a pan - Candida antifungal strategy Kaiyao Wei, Justin Overhulse, Marie Arlotto, Yingsheng Zhou, Nathan Dupper, Boris Kashemirov, Cécile Garnaud, Gaëlle Bourgine, Muriel Cornet, Gwenaël Rabut, Charles Mckenna, Carlo Petosa, Jérôme Govin
2024. ⟨hal-04799397⟩
Journal articles Identification of Protein Secretion Systems in Bacterial Genomes Using MacSyFinder Version 2 Sophie Abby, Rémi Denise, Eduardo P. C. Rocha
Methods in Molecular Biology, 2024, Bacterial Secretion Systems, 2715, pp.1-25. ⟨10.1007/978-1-0716-3445-5_1⟩. ⟨hal-04886614⟩
Conference papers Bioinformatic analysis of the evolution of phototrophy in a bacterial clade: Pseudomonadota Timothée Salzat-Hervouette, Sophie Abby
Journées Origin of Life, Guillaume Chaverot; Margaux Jullien, Nov 2024, Saint-Martin-d'Hères, France. ⟨hal-04970898⟩
Journal articles Oropharyngeal tularemia outbreak linked to drinking contaminated tap water in North-Western Iran Parisa Esmaeili, Simin Khayatzadeh, Max Maurin, Mohammad Mehdi Gouya, Saber Esmaeili, Ehsan Mostafavi
Diagnostic Microbiology and Infectious Disease, 2024, 110 (3), pp.116478. ⟨10.1016/j.diagmicrobio.2024.116478⟩. ⟨hal-04997900⟩
Conference papers MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes Sophie S. Abby
Symposium GT-SFBBM Archaea 2024, Oct 2024, Gif-sur Yvette, France. ⟨hal-04985182⟩
Journal articles A global chromoblastomycosis strategy and development of the global chromoblastomycosis working group Dallas Smith, Flávio Queiroz-Telles, Fahafahantsoa Rapelanoro Rabenja, Roderick Hay, Alexandro Bonifaz, Marlous Grijsen, Romain Blaizot, Fernando Messina, Yinggai Song, Shawn Lockhart, Alexander Jordan, Alyson Cavanaugh, Anastasia Litvintseva, Tom Chiller, Marco Schito, Sybren de Hoog, Vania Aparecida Vicente, Muriel Cornet, Daniel Argaw Dagne, Lala Ramarozatovo, Conceição de Maria Pedrozo E Silva de Azevedo, Daniel Wagner C. L. Santos
PLoS Neglected Tropical Diseases, 2024, 18 (10), pp.e0012562. ⟨10.1371/journal.pntd.0012562⟩. ⟨hal-04997091⟩
Poster communications Hospital sink drains and wastewater are reservoirs for antibiotic resistant bacteria. Aurélie Hennebique, Jostin Monge-Ruiz, Morgane Roger-Margueritat, Patrice Morand, Claire Terreaux-Masson, Nadia Kurtz, Jennifer Charbonnier, Max Maurin, Corinne Mercier, Caroline Landelle, Elena Buelow
Microbes, Oct 2024, Lille, France. ⟨hal-04976951⟩
Conference papers Study of quinone exchanges in the gut microbiota Morgane Roger-Margueritat, Sophie-Carole Chobert, Audrey Le Gouellec, Sophie Abby, Fabien Pierrel
19ème congrès de la Société Française de Microbiologie (SFM), Oct 2024, Lille, France. ⟨hal-04985457⟩
Poster communications Evolution of resistance integrons and impact of bacterial lifestyle and antibiotic stress Morgane Maniveau, Hugo Mathe-Hubert, Aissata Fofana, Yohann Lacotte, Sandra Da Re, Thomas Hindré, Sophie Raherison
19e congrès national de la SFM, Oct 2024, Lille, France. ⟨hal-04942242⟩
Journal articles A Mouse Model of Mild Clostridioides difficile Infection for the Characterization of Natural Immune Responses Assaf Mizrahi, Gauthier Péan de Ponfilly, Diane Sapa, Antonia Suau, Irène Mangin, Aurélie Baliarda, Sandra Hoys, Benoît Pilmis, Sylvie Lambert, Anaïs Brosse, Alban Le Monnier
Microorganisms, 2024, 12 (10), pp.1933. ⟨10.3390/microorganisms12101933⟩. ⟨hal-04764178⟩
Journal articles DciA secures bidirectional replication initiation in Vibrio cholerae Amelie Besombes, Yazid Adam, Christophe Possoz, Ivan Junier, François–xavier Barre, Jean-Luc Ferat
ier Barre, et al.. DciA secures bidirectional replication initiation in Vibrio cholerae. Nucleic Acids Research, 2024, 52 (20), pp.12324 - 12333. ⟨10.1093/nar/gkae795⟩. ⟨hal-04778285⟩
Journal articles Easy-to-use imaging-cytometry assay to analyze chitin patterns in yeasts Delphine Aldebert, Bastien Suarez, François Bettega, Emilie Boucher, Cecile Garnaud, Muriel Cornet
Journal of Medical Mycology = Journal de Mycologie Médicale, 2024, 34 (3), pp.101493. ⟨10.1016/j.mycmed.2024.101493⟩. ⟨hal-04886599⟩
Journal articles Current knowledge and practice of Candida auris screening in France: A nationwide survey from the French Society of Medical Mycology (SFMM) J. Guitard, A.P. Bellanger, J. Dorin, S. Cassaing, A. Capitaine, F. Gabriel, M. Nicolas, N. Coron, P. Penn, M. Moniot, D. Quinio, S. Ranque, M. Sasso, P. Lepape, E. Dannaoui, S. Brun, C. Lacroix, M. Cornu, A. Debourgogne, M.F. Durieux, G. Laurent, V. Bru, N. Bourgeois, Kévin Brunet, K. Brunet, T. Chouaki, A. Huguenin, L. Hasseine, D. Maubon, J.P. Gangneux, N. Desbois-Nogard, S. Houze, F. Dalle, M.E. Bougnoux, A. Alanio, D. Costa, F. Botterel, C. Hennequin
Journal of Medical Mycology = Journal de Mycologie Médicale, 2024, 34 (3), pp.101490. ⟨10.1016/j.mycmed.2024.101490⟩. ⟨hal-04675511⟩
Software MacSyFinder Bertrand Néron, Sophie Abby, Eduardo Rocha
2024, ⟨swh:1:dir:1e9ecd3b3b2bff278fac4b2814c56380c01853c9;origin=https://github.com/gem-pasteur/macsyfinder;visit=swh:1:snp:673748faa3f4f15687e2b6eb6d3d30b9eee9e68c;anchor=swh:1:rel:91c37f034f0348980547f788953425c0e490b8ea⟩. ⟨hal-04668349v2⟩
Journal articles The Epidemiological Investigation of Yersinia pestis , Francisella tularensis , and Arenavirus Infections in Small Mammals in Northwestern Iran Ehsan Mostafavi, Roya Mohammadpour, Saber Esmaeili, Ahmad Mahmoudi, Mostafa Salehi-Vaziri, Ahmad Ghasemi, Mahdi Rohani, Ali Mohammadi, Sana Eybpoosh, Neda Baseri, Christiane Denys, Max Maurin, Violaine Nicolas, Aude Lalis, Jean-Pierre Hugot
Vector Borne and Zoonotic Diseases, 2024, 24 (8), pp.489-498. ⟨10.1089/vbz.2023.0089⟩. ⟨hal-04677672⟩
Journal articles Azole resistance in Aspergillus flavus and associated fitness cost Elie Djenontin, Anne Debourgogne, Bita Mousavi, Laurence Delhaes, Muriel Cornet, Isabel Valsecchi, Makiath Adebo, Jacques Guillot, Françoise Botterel, Eric Dannaoui
Mycoses, 2024, 67 (7), pp.2169. ⟨10.1111/myc.13766⟩. ⟨hal-04997696⟩
Habilitation à diriger des recherches Immunothérapie des Cancers : Décryptage des mécanismes d’actions et Identification de biomarqueurs pour maximiser les réponses aux traitements Dalil Hannani
Immunologie. UGA (Université Grenoble Alpes), 2024. ⟨tel-04753901⟩
Journal articles An ethically guided preclinical device for phenotyping H2 production in laboratory rodents Victor Pascal-Moussellard, Emilie Boucher, Stéphane Tanguy, Philippe Cinquin, Pierre‐alain Barraud, Chloé Davin, Cordélia Salomez-Ihl, Dalil Hannani, François Boucher, Jean‐pierre Alcaraz
Animal Model Exp Med / Animal models and experimental medicine., 2024, ⟨10.1002/ame2.12460⟩. ⟨hal-04634474⟩
Poster communications PREDICTING BACTERIAL SECRETION SYSTEM PROTEINS USING POSITIVE AND UNLABELED MACHINE LEARNING Sandy Frank, Kwamou Ngaha, Renato Augusto Antoniassi Battistin, Sophie Abby, Nelle Varoquaux
JOBIM 2024, Jun 2024, Toulouse, France. ⟨hal-04975216⟩
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