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Journal articles Performance of Repeated Measures of (1–3)-β-D-Glucan, Mannan Antigen, and Antimannan Antibodies for the Diagnosis of Invasive Candidiasis in ICU Patients: A Preplanned Ancillary Analysis of the EMPIRICUS Randomized Clinical Trial Claire Dupuis, Clément Le Bihan, Daniele Maubon, Laure Calvet, Stéphane Ruckly, Carole Schwebel, Lila Bouadma, Elie Azoulay, Muriel Cornet, Jean-Francois Timsit, Rebecca Hamidfar-Roy, Magalie Ciroldi, Clichy Catherine Paugam-Burtz, Arnaud Foucrier, Jean Christophe Navellou, Michel Wolff, Jean-Francois Timsit, Lila Bouadma, Bruno Mourvillier, Romain Sonneville, Sarah Chemam, Didier Gruson, Bertrand Souweine, Alexandre Lautrette, Pierre Emmanuel Charles, Rémi Bruyere, Maël Hamet, Bernard Allaouchiche, Christian Guillaume, Charles-Eric Ber, Johanne Prothet, Thomas Rimmele, Laurent Argaud, Marie Simon, Martin Cour, Romain Hernu, Samir Jaber, Boris Jung, Mathieu Conseil, Yannael Coisel, Fouad Belafia, Kada Klouche, Laurent Amigues, Sonia Machado, Marianne Serveaux, Jean Chastre, Jean-Louis Trouillet, Joël Cousson, Pascal Raclot, Thierry Floch, Fabrice Zeni, Michael Darmon, Matthias Pichon, Maud Coudrot, Sebastien Ninet, Eric Diconne, Benoit Schlemmer, Elie Azoulay, Virginie Lemiale, Nicolas Maziers, Ferhat Meziani, David Schnell, Julie Boisrame-Helms, Raluca Neagu-Anca, Xavier Delabranche, Olivier Martinet, Maité Garrouste-Orgeas, Benoit Misset, Fabrice Brunee, Virginie Laurent, Guillaume Lacave, Jean-Pierre Bedos, Khadija Hammi, Lenka Styfalova, Joelle Fritzsch, Sophie Letrou, Lucie Estevez, Therese Devaux, Celine Dubien, Soumia Bayarassou, Catherine Jouvene Faure, Sylvie de La Salle, Albert Prades, Annie Rodriguez, Pierre Meur, Magda Warchol, Hanane El Haouari, Igor Theodose, Julien Fournier, Sebastien Cavelot, Lilia Bakir Kodja, Marie Joyeux Faure, Frédéric Tacco, Sonia Roos, Karima Dupre, Malek Abazid, Michele Essert, Philippe Arnaud, Emmanuelle Papy, Bellabes Ghezzoul, Olivier Gerbouin, Sandrine Corny Peccoux, Philippe Fagnoni, Anne Millaret, Christine Pivot, Cecile Gerard, Cyril Breuker, Audrey Castet, Fanny Charbonnier, Maryline Legrand, Julia Mordini, Isabelle Madeleine Chambrin, Anne Hutt Clauss, Mohamed Cherifi, Anne Pattyn, Murielle Cornet, Danièle Maubon, Eliane Benveniste, Fréderic Grenouillet, Christian Chochillon, Isabelle Accoberry, Denis Pons, Natacha Mrozek, Frédéric Dalle, Stephane Picot, Francoise Beyerle, Anne-Lise Bienvenu, Nathalie Bourgeois, Arnaud Fekkar, Dominique Toubas, Hélène Raberin, Ermanno Candolfi, Valérie Bru, Marie Dominique Kitzis, Yaye Senghor, Catherine Palette, Stéphane Ruckly, Aurélien Vesin, Jean-Paul Mira, Jean-Ralph Zahar, Dominique Larrey, Jean-Pierre Zarski, Jean-Ralph Zahar, Jean-Paul Mira, Dominique Larrey, Jean-Pierre Zarski, Edith Schir
Open Forum Infectious Diseases, 2021, 8 (3), ⟨10.1093/ofid/ofab080⟩. ⟨hal-04885972⟩
Journal articles Serology for Toxoplasma in Immunocompromised Patients: Still Useful? Damien Dupont, Hélène Fricker-Hidalgo, Marie-Pierre Brenier-Pinchart, Cécile Garnaud, Martine Wallon, Hervé Pelloux
Trends in Parasitology, 2021, 37 (3), pp.205-213. ⟨10.1016/j.pt.2020.09.006⟩. ⟨hal-04885998⟩
Journal articles Serum IRAP, a Novel Direct Biomarker of Prediabetes and Type 2 Diabetes? Candice Trocmé, Nicolas Gonnet, Margaux Di Tommaso, Hanen Samouda, Jean-Luc Cracowski, Claire Cracowski, Stéphanie Lambert-Porcheron, Martine Laville, Estelle Nobécourt, Chiraz Gaddhab, Allan Le Lay, Torsten Bohn, Christine Poitou, Karine Clément, Fahd Al-Mulla, Milad Bitar, Serge Bottari
Frontiers in Molecular Biosciences, 2021, 7, ⟨10.3389/fmolb.2020.596141⟩. ⟨hal-04009484⟩
Journal articles Insertion-sequence-mediated mutations both promote and constrain evolvability during a long-term experiment with bacteria Jessika Consuegra, Joël Gaffé, Richard Lenski, Thomas Hindré, Jeffrey Barrick, Olivier Tenaillon, Dominique Schneider
Nature Communications, 2021, 12 (1), pp.980. ⟨10.1038/s41467-021-21210-7⟩. ⟨hal-04883927⟩
Journal articles Amoebae can promote the survival of Francisella species in the aquatic environment Aurélie Hennebique, Julien Peyroux, Camille Brunet, Amandine Martin, Thomas Henry, Masa Knezevic, Marina Santic, Sandrine Boisset, Max Maurin
Emerging microbes & infections, 2021, ⟨10.1080/22221751.2021.1885999⟩. ⟨hal-03132662⟩
Habilitation à diriger des recherches Vers un bricolage rationalisé des génomes bactériens Ivan Junier
Génomique, Transcriptomique et Protéomique [q-bio.GN]. Université Grenoble Alpes, 2021. ⟨tel-04954459⟩
Journal articles The adherence questionnaires in chronic inflammatory rheumatic diseases and their psychometric properties: a systematic literature review Antsa Rakotozafiarison, Déborah Puyraimond-Zemmour, Xavier Romand, Matthieu Lavielle, René-Marc Flipo, Christophe Richez, Alain Saraux, Maxime Dougados, Laure Gossec, Anna Molto
Joint Bone Spine, 2021, pp.105160. ⟨10.1016/j.jbspin.2021.105160⟩. ⟨hal-03142841⟩
Journal articles Comparison of three modalities of plasmapheresis on coagulation: Centrifugal, single‐membrane filtration, and double‐filtration plasmapheresis Raphaël Marlu, Hamza Naciri Bennani, Landry Seyve, Johan Noble, Eloi Chevallier, Lionel Motte, Farida Imerzoukene, Mathilde Bugnazet, Maryvonne Christophe, Paolo Malvezzi, Thomas Jouve, Lionel Rostaing
Journal of Clinical Apheresis, 2021, 36 (3), pp.408-419. ⟨10.1002/jca.21879⟩. ⟨hal-04997717⟩
Conference papers MMAVAx : un vaccin contre Pseudomonas aeruginosa. Sarah Thiroux, Elodie Meynet, David Laurin, Jean Luc Lenormand, Boubou Camara, Bertrand Toussaint, Audrey Le Gouëllec
GDR Pseudomonas 2021, 2021, Malbuisson, France. ⟨hal-04812515⟩
Journal articles Tularemia as a Mosquito-Borne Disease Zakaria Abdellahoum, Max Maurin, Idir Bitam
Microorganisms, 2021, 9 (1), pp.26. ⟨10.3390/microorganisms9010026⟩. ⟨hal-03839620⟩
Book sections Computational tools for the multiscale analysis of Hi-C data in bacterial chromosomes Nelle Varoquaux, Virginia S Lioy, Frédéric Boccard, Ivan Junier
Hi-C Data Analysis, 2301, Springer US, pp.197-207, 2021, Methods in Molecular Biology, ⟨10.1007/978-1-0716-1390-0_10⟩. ⟨hal-03375884⟩
Journal articles Structural and functional analysis of the Francisella lysine decarboxylase as a key actor in oxidative stress resistance Jan Felix, Claire Siebert, Juila Novion Ducassou, Jérôme Nigou, Pierre Simon Garcia, Angélique Fraudeau, Karine Huard, Caroline Mas, Celine Brochier-Armanet, Yohann Couté, Irina Gutsche, Patricia Renesto
Scientific Reports, 2021, 11 (1), pp.972. ⟨10.1038/s41598-020-79611-5⟩. ⟨hal-03118173⟩
Journal articles Ultrasound-stimulated Brownian ratchet enhances diffusion of molecules retained in hydrogels Faezeh Gerayeli, Nawel Khalef, Aziz Bakri, Philippe Benech, Donald Martin
Nanomedicine: Nanotechnology, Biology and Medicine, 2021, 31, pp.102308. ⟨10.1016/j.nano.2020.102308⟩. ⟨hal-02987851⟩
Journal articles Cell-free expression of the outer membrane protein OprF of $Pseudomonas\ aeruginosa$ for vaccine purposes Géraldine Mayeux, Landry Gayet, Lavinia Liguori, Marine Odier, Donald Martin, Sandra Cortès, Béatrice Schaack, Jean-Luc Lenormand
Life Science Alliance, 2021, 4 (6), pp.e202000958. ⟨10.26508/lsa.202000958⟩. ⟨hal-03358640⟩
Journal articles Dynamics of the compartmentalized Streptomyces chromosome during metabolic differentiation Virginia S Lioy, Jean-Noel Lorenzi, Soumaya Najah, Thibault Poinsignon, Herve Leh, Corinne Saulnier, Bertrand Aigle, Sylvie Lautru, Annabelle Thibessard, Olivier Lespinet, Pierre Leblond, Yan Jaszczyszyn, Kevin Gorrichon, Nelle Varoquaux, Ivan Junier, Frédéric Boccard, Jean-Luc Pernodet, Stéphanie G. Bury-Moné
Nature Communications, 2021, 12, pp.5221. ⟨10.1038/s41467-021-25462-1⟩. ⟨hal-03128776v2⟩
Journal articles Autophagic Markers in Chordomas: Immunohistochemical Analysis and Comparison with the Immune Microenvironment of Chordoma Tissues Georgia Karpathiou, Maroa Dridi, Lila Krebs-Drouot, François Vassal, Emmanuel Jouanneau, Timothée Jacquesson, Cédric Barrey, Jean Michel Prades, Jean Marc Dumollard, David Meyronet, Jean Boutonnat, Michel Péoc’h
Cancers, 2021, 13 (9), pp.2169. ⟨10.3390/cancers13092169⟩. ⟨hal-03706797⟩
Journal articles Metabotypes of Pseudomonas aeruginosa Correlate with Antibiotic Resistance, Virulence and Clinical Outcome in Cystic Fibrosis Chronic Infections Oriane Moyne, Florence Castelli, Dominique J. Bicout, Julien Boccard, Boubou Camara, Benoit Cournoyer, Eric Faudry, Samuel Terrier, Dalil Hannani, Sarah Huot-Marchand, Claire Léger, Max Maurin, Tuan-Dung Ngo, Caroline Plazy, Robert Quinn, Ina Attrée, François Fenaille, Audrey Le Gouellec, Bertrand Toussaint
Metabolites, 2021, 11 (2), ⟨10.3390/metabo11020063⟩. ⟨hal-03146820⟩
Journal articles Presence of Francisella tularensis subsp. holarctica DNA in the Aquatic Environment in France Camille D Brunet, Aurélie Hennebique, Julien Peyroux, Isabelle Pelloux, Yvan Caspar, Max Maurin
Microorganisms, 2021, 9 (7), pp.1398. ⟨10.3390/microorganisms9071398⟩. ⟨hal-03419714⟩
Journal articles Cerebral Venous Thrombosis: Clinical, Radiological, Biological, and Etiological Characteristics of a French Prospective Cohort (FPCCVT)-Comparison With ISCVT Cohort Aude Triquenot Bagan, Isabelle Crassard, Ludovic Drouet, Marianne Barbieux-Guillot, Raphael Marlu, Emmanuelle Robinet-Borgomino, Pierre-Emmanuel Morange, Valerie Wolff, Lelia Grunebaum, Frederic Klapczynski, Elisabeth Andre-Kerneis, Fernando Pico, Brigitte Martin-Bastenaire, Emmanuel Ellie, Fanny Menard, Francois Rouanet, Genevieve Freyburger, Gaelle Godeneche, Hong-An Allano, Thierry Moulin, Guillaume Mourey, Laurent Derex, Micheline Berruyer, Gwenaelle Runavot, Catherine Trichet, Fausto Viader, Agnes Le Querrec, Thomas Tarek Husein, Sophie Cluet-Dennetiere, Francisco Macian-Montoro, Magali Donnard, Benoit Guillon, Catherine Ternisien, Mathieu Zuber, Sophie Laplanche, Philippe Tassan, Jean-Yves Peeltier, Sandrine Canaple, Bertrand Roussel, Nicolas Gaillard, Emilie Scavazza, Veronique Le Cam Duchez
Frontiers in Neurology, 2021, 12, pp.753110. ⟨10.3389/fneur.2021.753110⟩. ⟨hal-03607029⟩
Journal articles Crossing of the Cystic Barriers of Toxoplasma gondii by the Fluorescent Coumarin Tetra-Cyclopeptide Céline Dard, Baptiste Leforestier, Flaviane Francisco Hilário, Mohamed Dit Mady Traoré, Marie-Ange Lespinasse, Basile Pérès, Marie-Carmen Molina, Rossimiriam Pereira de Freitas, Anne Milet, Danièle Maubon, Yung-Sing Wong
Molecules, 2021, 26 (24), pp.7506. ⟨10.3390/molecules26247506⟩. ⟨hal-03692230⟩
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