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    Homepage > Research > Teams > TREE > Publications
    TREE Team's publications

    Publications

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    Keywords

    • evolution
    • microorganisms
    • genomics
    • microbiota
    • membranes
    • antimicrobial resistance
    • metabolism
    • therapeutic and diagnostic engineering
    • immunity
    • evolution
    • microorganisms
    • genomics
    • microbiota
    • membranes
    • antimicrobial resistance
    • metabolism
    • therapeutic and diagnostic engineering
    • immunity
    HAL publications access
    Journal articles Comparison of three modalities of plasmapheresis on coagulation: Centrifugal, single‐membrane filtration, and double‐filtration plasmapheresis Raphaël Marlu, Hamza Naciri Bennani, Landry Seyve, Johan Noble, Eloi Chevallier, Lionel Motte, Farida Imerzoukene, Mathilde Bugnazet, Maryvonne Christophe, Paolo Malvezzi, Thomas Jouve, Lionel Rostaing
    Journal of Clinical Apheresis, 2021, 36 (3), pp.408-419. ⟨10.1002/jca.21879⟩. ⟨hal-04997717⟩
    Journal articles Ultrasound-stimulated Brownian ratchet enhances diffusion of molecules retained in hydrogels Faezeh Gerayeli, Nawel Khalef, Aziz Bakri, Philippe Benech, Donald Martin
    Nanomedicine: Nanotechnology, Biology and Medicine, 2021, 31, pp.102308. ⟨10.1016/j.nano.2020.102308⟩. ⟨hal-02987851⟩
    Patents Antibody against the OprF protein of Pseudomonas aeruginosa, use thereof as a medicament and pharmaceutical composition containing same Jean-Luc Lenormand
    France, Patent n° : WO2021013904 (A1). 2021. ⟨hal-05316359⟩
    Conference papers MMAVAx : un vaccin contre Pseudomonas aeruginosa. Sarah Thiroux, Elodie Meynet, David Laurin, Jean Luc Lenormand, Boubou Camara, Bertrand Toussaint, Audrey Le Gouëllec
    GDR Pseudomonas 2021, 2021, Malbuisson, France. ⟨hal-04812515⟩
    Book sections Computational tools for the multiscale analysis of Hi-C data in bacterial chromosomes Nelle Varoquaux, Virginia S Lioy, Frédéric Boccard, Ivan Junier
    Hi-C Data Analysis, 2301, Springer US, pp.197-207, 2021, Methods in Molecular Biology, ⟨10.1007/978-1-0716-1390-0_10⟩. ⟨hal-03375884⟩
    Journal articles Structural and functional analysis of the Francisella lysine decarboxylase as a key actor in oxidative stress resistance Jan Felix, Claire Siebert, Juila Novion Ducassou, Jérôme Nigou, Pierre Simon Garcia, Angélique Fraudeau, Karine Huard, Caroline Mas, Celine Brochier-Armanet, Yohann Couté, Irina Gutsche, Patricia Renesto
    Scientific Reports, 2021, 11 (1), pp.972. ⟨10.1038/s41598-020-79611-5⟩. ⟨hal-03118173⟩
    Journal articles Tularemia as a Mosquito-Borne Disease Zakaria Abdellahoum, Max Maurin, Idir Bitam
    Microorganisms, 2021, 9 (1), pp.26. ⟨10.3390/microorganisms9010026⟩. ⟨hal-03839620⟩
    Journal articles Cell-free expression of the outer membrane protein OprF of $Pseudomonas\ aeruginosa$ for vaccine purposes Géraldine Mayeux, Landry Gayet, Lavinia Liguori, Marine Odier, Donald Martin, Sandra Cortès, Béatrice Schaack, Jean-Luc Lenormand
    Life Science Alliance, 2021, 4 (6), pp.e202000958. ⟨10.26508/lsa.202000958⟩. ⟨hal-03358640⟩
    Journal articles Dynamics of the compartmentalized Streptomyces chromosome during metabolic differentiation Virginia S Lioy, Jean-Noel Lorenzi, Soumaya Najah, Thibault Poinsignon, Herve Leh, Corinne Saulnier, Bertrand Aigle, Sylvie Lautru, Annabelle Thibessard, Olivier Lespinet, Pierre Leblond, Yan Jaszczyszyn, Kevin Gorrichon, Nelle Varoquaux, Ivan Junier, Frédéric Boccard, Jean-Luc Pernodet, Stéphanie G. Bury-Moné
    Nature Communications, 2021, 12, pp.5221. ⟨10.1038/s41467-021-25462-1⟩. ⟨hal-03128776v2⟩
    Journal articles Autophagic Markers in Chordomas: Immunohistochemical Analysis and Comparison with the Immune Microenvironment of Chordoma Tissues Georgia Karpathiou, Maroa Dridi, Lila Krebs-Drouot, François Vassal, Emmanuel Jouanneau, Timothée Jacquesson, Cédric Barrey, Jean Michel Prades, Jean Marc Dumollard, David Meyronet, Jean Boutonnat, Michel Péoc’h
    Cancers, 2021, 13 (9), pp.2169. ⟨10.3390/cancers13092169⟩. ⟨hal-03706797⟩
    Journal articles Presence of Francisella tularensis subsp. holarctica DNA in the Aquatic Environment in France Camille D Brunet, Aurélie Hennebique, Julien Peyroux, Isabelle Pelloux, Yvan Caspar, Max Maurin
    Microorganisms, 2021, 9 (7), pp.1398. ⟨10.3390/microorganisms9071398⟩. ⟨hal-03419714⟩
    Journal articles Metabotypes of Pseudomonas aeruginosa Correlate with Antibiotic Resistance, Virulence and Clinical Outcome in Cystic Fibrosis Chronic Infections Oriane Moyne, Florence Castelli, Dominique J. Bicout, Julien Boccard, Boubou Camara, Benoit Cournoyer, Eric Faudry, Samuel Terrier, Dalil Hannani, Sarah Huot-Marchand, Claire Léger, Max Maurin, Tuan-Dung Ngo, Caroline Plazy, Robert Quinn, Ina Attrée, François Fenaille, Audrey Le Gouellec, Bertrand Toussaint
    Metabolites, 2021, 11 (2), ⟨10.3390/metabo11020063⟩. ⟨hal-03146820⟩
    Journal articles Cerebral Venous Thrombosis: Clinical, Radiological, Biological, and Etiological Characteristics of a French Prospective Cohort (FPCCVT)-Comparison With ISCVT Cohort Aude Triquenot Bagan, Isabelle Crassard, Ludovic Drouet, Marianne Barbieux-Guillot, Raphael Marlu, Emmanuelle Robinet-Borgomino, Pierre-Emmanuel Morange, Valerie Wolff, Lelia Grunebaum, Frederic Klapczynski, Elisabeth Andre-Kerneis, Fernando Pico, Brigitte Martin-Bastenaire, Emmanuel Ellie, Fanny Menard, Francois Rouanet, Genevieve Freyburger, Gaelle Godeneche, Hong-An Allano, Thierry Moulin, Guillaume Mourey, Laurent Derex, Micheline Berruyer, Gwenaelle Runavot, Catherine Trichet, Fausto Viader, Agnes Le Querrec, Thomas Tarek Husein, Sophie Cluet-Dennetiere, Francisco Macian-Montoro, Magali Donnard, Benoit Guillon, Catherine Ternisien, Mathieu Zuber, Sophie Laplanche, Philippe Tassan, Jean-Yves Peeltier, Sandrine Canaple, Bertrand Roussel, Nicolas Gaillard, Emilie Scavazza, Veronique Le Cam Duchez
    Frontiers in Neurology, 2021, 12, pp.753110. ⟨10.3389/fneur.2021.753110⟩. ⟨hal-03607029⟩
    Journal articles Crossing of the Cystic Barriers of Toxoplasma gondii by the Fluorescent Coumarin Tetra-Cyclopeptide Céline Dard, Baptiste Leforestier, Flaviane Francisco Hilário, Mohamed Dit Mady Traoré, Marie-Ange Lespinasse, Basile Pérès, Marie-Carmen Molina, Rossimiriam Pereira de Freitas, Anne Milet, Danièle Maubon, Yung-Sing Wong
    Molecules, 2021, 26 (24), pp.7506. ⟨10.3390/molecules26247506⟩. ⟨hal-03692230⟩
    Journal articles Complement alternative and mannose-binding lectin pathway activation is associated with COVID-19 mortality Federica Defendi, Corentin Leroy, Olivier Epaulard, Giovanna Clavarino, Antoine Vilotitch, Marion Le Marechal, Marie-Christine Jacob, Tatiana Raskovalova, Martine Pernollet, Audrey Le Gouellec, Jean-Luc Bosson, Pascal Poignard, Matthieu Roustit, Nicole Thielens, Chantal Dumestre-Pérard, Jean-Yves Cesbron
    Frontiers in Immunology, 2021, 12, pp.742446. ⟨10.3389/fimmu.2021.742446⟩. ⟨hal-03341868⟩
    Journal articles Development, Optimization, and Validation of a Multiplex Real-Time PCR Assay on the BD MAX Platform for Routine Diagnosis of Acanthamoeba Keratitis Danièle Maubon, Claire Richarme, Lucie Post, Marie G. Robert, Diane Bernheim, Cécile Garnaud
    Journal of Molecular Diagnostics, 2020, 22, pp.1400 - 1407. ⟨10.1016/j.jmoldx.2020.09.001⟩. ⟨hal-03493015⟩
    Poster communications Présence de F. tularensis subsp. holarctica, agent de la tularémie, dans l'eau environnementale en France Camille Brunet, Aurélie Hennebique, Julien Peyroux, Yvan Caspar, Max Maurin
    40ème Réunion Interdisciplinaire de Chimiothérapie Anti-Infectieuse, Dec 2020, Paris, France. ⟨hal-04960152⟩
    Poster communications Evaluation du kit de qPCR Biotoxis pour la détection de Francisella tularensis Aurélie Hennebique, Fabienne Gas, Hélène Batina, Cécilia de Araujo, Karine Bizet, Max Maurin
    40ème Réunion Interdisciplinaire de Chimiothérapie Anti-Infectieuse, Dec 2020, Paris, France. ⟨hal-04960145⟩
    Journal articles Geochemical transition zone powering microbial growth in subsurface sediments Rui Zhao, José Mogollón, Sophie S. Abby, Christa Schleper, Jennifer Biddle, Desiree Roerdink, Ingunn Thorseth, Steffen Jørgensen
    Proceedings of the National Academy of Sciences of the United States of America, 2020, pp.202005917. ⟨10.1073/pnas.2005917117⟩. ⟨hal-03079193⟩
    Journal articles Evaluation of the Biotoxis qPCR detection® kit for Francisella tularensis detection in clinical and environmental samples. Aurélie Hennebique, Fabienne Gas, Hélène Batina, Cécilia de Araujo, Karine Bizet, Max Maurin
    Journal of Clinical Microbiology, 2020, 59 (1), pp.e01434-20. ⟨10.1128/jcm.01434-20⟩. ⟨hal-03034358⟩
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