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    Homepage > Research > Teams > TREE > Publications
    TREE Team's publications

    Publications

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    Keywords

    • evolution
    • microorganisms
    • genomics
    • microbiota
    • membranes
    • antimicrobial resistance
    • metabolism
    • therapeutic and diagnostic engineering
    • immunity
    • evolution
    • microorganisms
    • genomics
    • microbiota
    • membranes
    • antimicrobial resistance
    • metabolism
    • therapeutic and diagnostic engineering
    • immunity
    HAL publications access
    Journal articles Clinical aspects of previously treated chromoblastomycosis: A case series from Madagascar Fandresena Arilala Sendrasoa, Naina Harinjara Razanakoto, Mendrika Fifaliana Rakotoarisaona, Malalaniaina Andrianarison, Onivola Raharolahy, Tahinamandranto Rasamoelina, Irina Mamisoa Ranaivo, Moril Sata, Volatantely Ratovonjanahary, Danièle Maubon, Mala Rakoto Andrianarivelo, Muriel Cornet, Lala Soavina Ramarozatovo, Fahafahantsoa Rapelanoro Rabenja
    International Journal of Infectious Diseases, 2020, 101, pp.228-232. ⟨10.1016/j.ijid.2020.09.1479⟩. ⟨hal-03703141⟩
    Journal articles Evaluation of the Biotoxis qPCR detection® kit for Francisella tularensis detection in clinical and environmental samples. Aurélie Hennebique, Fabienne Gas, Hélène Batina, Cécilia de Araujo, Karine Bizet, Max Maurin
    Journal of Clinical Microbiology, 2020, 59 (1), pp.e01434-20. ⟨10.1128/jcm.01434-20⟩. ⟨hal-03034358⟩
    Journal articles Genomic trajectories to fluoroquinolone resistance in Francisella tularensis subsp. holarctica live vaccine strain Vivien Sutera, Aurélie Hennebique, Fabrice Lopez, Nicolas Fernandez, Dominique Schneider, Max Maurin
    International Journal of Antimicrobial Agents, 2020, 56, ⟨10.1016/j.ijantimicag.2020.106153⟩. ⟨hal-03139160⟩
    Journal articles Evaluation of microbiological performance and the potential clinical Impact of the ePlex® blood culture identification panels for the rapid diagnosis of bacteremia and fungemia Sabrina Bryant, Iyad Almahmoud, Isabelle Pierre, Julie Bardet, Saber Touati, Daniele Maubon, Muriel Cornet, Claire Richarme, Max Maurin, Patricia Pavese, Yvan Caspar
    Frontiers in Cellular and Infection Microbiology, 2020, 10, pp.594951. ⟨10.3389/fcimb.2020.594951⟩. ⟨hal-03703144⟩
    Journal articles Cost‐effectiveness of emicizumab vs bypassing agents in the prevention of bleeding episodes in haemophilia A patients with anti‐FVIII inhibitors in France Benoît Polack, Marc Trossaërt, Mathias Cousin, Sandrine Baffert, Alexandra Pruvot, Chloé Godard
    Haemophilia, 2020, 27 (1), ⟨10.1111/hae.14129⟩. ⟨hal-04916973⟩
    Journal articles Tularemia: A Case Series of Patients Diagnosed at the National Reference Center for Rickettsioses From 2008 to 2017 Anne Darmon-Curti, François Darmon, Sophie Edouard, Aurélie Hennebique, Thomas Guimard, Guillaume Martin-Blondel, Timothée Klopfenstein, Jean-Philippe Talarmin, Didier Raoult, Max Maurin, Pierre-Edouard Fournier
    Open Forum Infectious Diseases, 2020, Open Forum Infectious Diseases, 7 (11), pp.1-9. ⟨10.1093/ofid/ofaa440⟩. ⟨hal-03034241⟩
    Journal articles Serotyping, host genes and cytokines response in human ocular toxoplasmosis Luz Eliana Mantilla-Muriel, Alejandro Hernández-De-Los-Ríos, Mónica Rincón, Alejandra De-La-Torre, Mateo Murillo-León, Néstor Cardona, Marie France Cesbron-Delauw, Corinne Mercier, Juan Carlos Sepúlveda-Arias, Jorge Enrique Gomez-Marin
    Microbial Pathogenesis, 2020, 148, pp.104465. ⟨10.1016/j.micpath.2020.104465⟩. ⟨hal-05008436⟩
    Journal articles Genome wide transcriptomic analysis of the soil ammonia oxidizing archaeon Nitrososphaera viennensis upon exposure to copper limitation Carolina Reyes, Logan Hodgskiss, Melina Kerou, Thomas Pribasnig, Sophie S. Abby, Barbara Bayer, Stephan Kraemer, Christa Schleper
    The International Society of Microbiologial Ecology Journal, 2020, 14 (11), pp.2659-2674. ⟨10.1038/s41396-020-0715-2⟩. ⟨hal-02992775⟩
    Journal articles Evaluation of the human type-3 adenoviral dodecahedron as a vector to target acute myeloid leukemia Benjamin Caulier, Gaëlle Stofleth, Dalil Hannani, Mélanie Guidetti, Véronique Josserand, David Laurin, Jadwiga Chroboczek, Pascal Mossuz, Dominique Plantaz
    Molecular Therapy - Methods and Clinical Development, 2020, ⟨10.1016/j.omtm.2020.11.009⟩. ⟨hal-03013800⟩
    Journal articles The transcriptional factors CDX2 and FOXA1 in chordomas Maroa Dridi, Jean Boutonnat, Jean Marc Dumollard, Michel Péoc’h, Georgia Karpathiou
    Pathology - Research and Practice, 2020, 216 (11), pp.153160. ⟨10.1016/j.prp.2020.153160⟩. ⟨hal-04997904⟩
    Journal articles Ancestral Reconstructions Decipher Major Adaptations of Ammonia-Oxidizing Archaea upon Radiation into Moderate Terrestrial and Marine Environments Sophie S. Abby, Melina Kerou, Christa Schleper
    mBio, 2020, 11 (5), ⟨10.1128/mBio.02371-20⟩. ⟨hal-02992748⟩
    Journal articles Francisella tularensis, Tularemia and Serological Diagnosis Max Maurin
    Frontiers in Cellular and Infection Microbiology, 2020, 10, ⟨10.3389/fcimb.2020.512090⟩. ⟨hal-03839667⟩
    Journal articles The controversy on the ancestral arsenite oxidizing enzyme; deducing evolutionary histories with phylogeny and thermodynamics Julie Szyttenholm, Florence Chaspoul, Marielle Bauzan, Anne-Lise Ducluzeau, Mahmoud Hajj Chehade, Fabien Pierrel, Yann Denis, Wolfgang Nitschke, Barbara Schoepp-Cothenet
    Biochimica biophysica acta (BBA) - Bioenergetics, 2020, 1861 (10), pp.148252. ⟨10.1016/j.bbabio.2020.148252⟩. ⟨hal-02896357⟩
    Journal articles Chordomas: A review with emphasis on their pathophysiology, pathology, molecular biology, and genetics Georgia Karpathiou, Jean Marc Dumollard, Maroa Dridi, Pierre Dal Col, Fabrice-Guy Barral, Jean Boutonnat, Michel Peoc’h
    Pathology - Research and Practice, 2020, 216 (9), pp.153089. ⟨10.1016/j.prp.2020.153089⟩. ⟨hal-04997714⟩
    Journal articles Feature-based molecular networking in the GNPS analysis environment Louis-Félix Nothias, Daniel Petras, Robin Schmid, Kai Dührkop, Johannes Rainer, Abinesh Sarvepalli, Ivan Protsyuk, Madeleine Ernst, Hiroshi Tsugawa, Markus Fleischauer, Fabian Aicheler, Alexander Aksenov, Oliver Alka, Pierre-Marie Allard, Aiko Barsch, Xavier Cachet, Andres Mauricio Caraballo-Rodriguez, Ricardo da Silva, Tam Dang, Neha Garg, Julia Gauglitz, Alexey Gurevich, Giorgis Isaac, Alan Jarmusch, Zdeněk Kameník, Kyo Bin Kang, Nikolas Kessler, Irina Koester, Ansgar Korf, Audrey Le Gouellec, Marcus Ludwig, Christian Martin H., Laura-Isobel Mccall, Jonathan Mcsayles, Sven Meyer, Hosein Mohimani, Mustafa Morsy, Oriane Moyne, Steffen Neumann, Heiko Neuweger, Ngoc Hung Nguyen, Melissa Nothias-Esposito, Julien Paolini, Vanessa Phelan, Tomáš Pluskal, Robert Quinn, Simon Rogers, Bindesh Shrestha, Anupriya Tripathi, Justin van Der Hooft, Fernando Vargas, Kelly Weldon, Michael Witting, Heejung Yang, Zheng Zhang, Florian Zubeil, Oliver Kohlbacher, Sebastian Böcker, Theodore Alexandrov, Nuno Bandeira, Mingxun Wang, Pieter Dorrestein
    Nature Methods, 2020, 17 (9), pp.905-908. ⟨10.1038/s41592-020-0933-6⟩. ⟨hal-03012609⟩
    Journal articles Toxoplasma gondii-specific IgG avidity testing in pregnant women Cécile Garnaud, Hélène Fricker-Hidalgo, Birgitta Evengård, Míriam J Álvarez-Martinez, Eskild Petersen, Laetitia Maria Kortbeek, Florence Robert-Gangneux, Isabelle Villena, Carmen Costache, Małgorzata Paul, Valeria Meroni, Edward Guy, Peter L Chiodini, Marie-Pierre Brenier-Pinchart, Hervé Pelloux
    Clinical Microbiology and Infection, 2020, 26 (9), pp.1155-1160. ⟨10.1016/j.cmi.2020.04.014⟩. ⟨hal-02565728⟩
    Journal articles Requirements for DNA-Bridging Proteins to Act as Topological Barriers of the Bacterial Genome Marc Joyeux, Ivan Junier
    Biophysical Journal, 2020, 119 (6), pp.1215-1225. ⟨10.1016/j.bpj.2020.08.004⟩. ⟨hal-03017254⟩
    Journal articles Effect of immunoadsorption alone or combined with membrane filtration on hemostasis parameters Raphaël Marlu, Hamza Naciri Bennani, Landry Seyve, Paolo Malvezzi, Bénédicte Janbon, Johan Noble, Maryvonne Christophe, Lionel Motte, Farida Imerzoukene, Eloi Chevallier, Lionel Rostaing, Thomas Jouve
    Journal of Clinical Apheresis, 2020, 35 (5), pp.444-452. ⟨10.1002/jca.21825⟩. ⟨hal-04997791⟩
    Journal articles ReDU: a framework to find and reanalyze public mass spectrometry data Alan Jarmusch, Mingxun Wang, Christine Aceves, Rohit Advani, Shaden Aguirre, Alexander Aksenov, Gajender Aleti, Allegra Aron, Anelize Bauermeister, Sanjana Bolleddu, Amina Bouslimani, Andres Mauricio Caraballo Rodriguez, Rama Chaar, Roxana Coras, Emmanuel Elijah, Madeleine Ernst, Julia Gauglitz, Emily Gentry, Makhai Husband, Scott Jarmusch, Kenneth Jones, Zdenek Kamenik, Audrey Le Gouellec, Aileen Lu, Laura-Isobel Mccall, Kerry Mcphail, Michael Meehan, Alexey Melnik, Riya Menezes, Yessica Alejandra Montoya Giraldo, Ngoc Hung Nguyen, Louis Felix Nothias, Mélissa Nothias-Esposito, Morgan Panitchpakdi, Daniel Petras, Robert Quinn, Nicole Sikora, Justin van der Hooft, Fernando Vargas, Alison Vrbanac, Kelly Weldon, Rob Knight, Nuno Bandeira, Pieter Dorrestein
    Nature Methods, 2020, 17 (9), pp.901-904. ⟨10.1038/s41592-020-0916-7⟩. ⟨hal-04886483⟩
    Journal articles Extracellular vesicles from myelodysplastic mesenchymal stromal cells induce DNA damage and mutagenesis of hematopoietic stem cells through miRNA transfer Mathieu Meunier, Audrey Guttin, Sarah Ancelet, David Laurin, Johanna Zannoni, Christine Lefebvre, Sylvie Tondeur, Virginie Persoons, Mylène Pezet, Karin Pernet-Gallay, Florent Chuffart, Sophie Rousseaux, Quentin Testard, Julien Thevenon, Claire Jouzier, Jean-François Deleuze, Karine Laulagnier, Rémy Sadoul, Christine Chatellard, Pierre Hainaut, Benoît Polack, Jean-Yves Cahn, Jean-Paul Issartel, Sophie Park
    Leukemia, 2020, 34 (8), pp.2249-2253. ⟨10.1038/s41375-020-0738-8⟩. ⟨hal-03969633⟩
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