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    Homepage > Research > Teams > TREE > Publications
    TREE Team's publications

    Publications

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    Keywords

    • evolution
    • microorganisms
    • genomics
    • microbiota
    • membranes
    • antimicrobial resistance
    • metabolism
    • therapeutic and diagnostic engineering
    • immunity
    • evolution
    • microorganisms
    • genomics
    • microbiota
    • membranes
    • antimicrobial resistance
    • metabolism
    • therapeutic and diagnostic engineering
    • immunity
    HAL publications access
    Journal articles Evaluation of ID Fungi Plates Medium for Identification of Molds by MALDI Biotyper Marie Gladys Robert, Charlotte Romero, Céline Dard, Cécile Garnaud, Odile Cognet, Thomas Girard, Tahinamandranto Rasamoelina, Muriel Cornet, Danièle Maubon
    Journal of Clinical Microbiology, 2020, 58 (5), ⟨10.1128/JCM.01687-19⟩. ⟨hal-03703158⟩
    Journal articles Antifungal susceptibility testing practices in mycology laboratories in France, 2018 A.-P. Bellanger, F. Persat, F. Foulet, C. Bonnal, I. Accoceberry, C. Angebault, A. Angoulvant, O. Augereau, E. Bailly, F. Bert, J. Bonhomme, J.-P. Bouchara, M.-E. Bougnoux, P. Bourdeau, B. Bouteille, S. Brun, K. Brunet, A.-M. Camin-Ravenne, S. Cassaing, T. Chouaki, M. Cornet, D. Costa, N. Desbois, J. Dorin, A. Fekkar, A. Fiacre, E. Fréalle, J.-P. Gangneux, J. Guillot, J. Guitard, L. Hasseine, A. Huguenin, L. Lachaud, S. Larréché, Rose-Anne Lavergne, S. Le Gal, Y. Le Govic, V. Letscher-Bru, M. Machouart, E. Mazars, C. Nourrisson, A. Paugam, S. Ranque, Veronica Risco-Castillo, M. Sasso, M. Sautour, B. Sendid, Y. Senghor, F. Botterel, Eric Dannaoui
    Journal of Medical Mycology = Journal de Mycologie Médicale, 2020, 30 (2), pp.100970. ⟨10.1016/j.mycmed.2020.100970⟩. ⟨hal-02566987⟩
    Journal articles How to estimate time of infection with Toxoplasma gondii in pregnant women. Use of specific IgG and IgM kinetics by 7 techniques on 691 sera Hélène Fricker-Hidalgo, Sébastien Bailly, Marie-Pierre Brenier-Pinchart, Céline Dard, Dominique Jean, Anne-Laure Coston, Cécile Garnaud, Hervé Pelloux
    Diagnostic Microbiology and Infectious Disease, 2020, 96 (4), pp.114987. ⟨10.1016/j.diagmicrobio.2020.114987⟩. ⟨hal-04661244⟩
    Journal articles Specific PCR and Quantitative Real-Time PCR in Ocular Samples from Acute and Delayed-Onset Postoperative Endophthalmitis Julie Kosacki, Sandrine Boisset, Max Maurin, Pierre-Loic Cornut, Gilles Thuret, Ralitsa Hubanova, Francois Vandenesch, Anne Carricajo, Florent Aptel, Christophe Chiquet
    American Journal of Ophthalmology, 2020, 212, pp.34-42. ⟨10.1016/j.ajo.2019.11.026⟩. ⟨hal-04850613⟩
    Journal articles Molecular diagnosis of toxoplasmosis: evaluation of automated DNA extraction using eMAG ® (bioMérieux) on buffy coat, cerebrospinal and bronchoalveolar lavage fluids Fanny Zhao, Lionnel Bulin, Hélène Fricker-Hidalgo, Quentin Renaut, Marie Gladys Robert, Cécile Garnaud, Hervé Pelloux, Marie-Pierre Brenier-Pinchart
    Clinical Chemistry and Laboratory Medicine, 2020, 58 (3), pp.e91-e93. ⟨10.1515/cclm-2019-0753⟩. ⟨hal-04851332⟩
    Journal articles Intracellular Positioning Systems Limit the Entropic Eviction of Secondary Replicons Toward the Nucleoid Edges in Bacterial Cells Julie Dauverd -Girault, Charlène Planchenault, Marine C Pons, Caroline Schiavon, Patricia Siguier, Jérôme Rech, Catherine Guynet, Julie Dauverd-Girault, Jean Cury, Eduardo P C Rocha, Ivan Junier, François Cornet, Olivier Espéli
    Journal of Molecular Biology, 2020, 432 (3), pp.745-761. ⟨10.1016/j.jmb.2019.11.027⟩. ⟨hal-02392007⟩
    Poster communications Adaptive plasticity of membranes and membrane lipids during a long-term evolution experiment with bacteria Hammam M. Antar, Y. Yamaryo-Botté, Y. Usson, J. Jouhet, M. Martin, T. Hindré, C.Y. Botté, D. Schneider, C. Mercier
    Metabolomic Day, Feb 2020, La Tronche Grenoble, France. ⟨hal-04977329⟩
    Journal articles Francisella novicida and F. philomiragia biofilm features conditionning fitness in spring water and in presence of antibiotics Claire Siebert, Corinne Villers, Georgios Pavlou, Bastien Touquet, Nandadeva Yakandawala, Isabelle Tardieux, Patricia Renesto
    PLoS ONE, 2020, 15 (2), pp.e0228591. ⟨10.1371/journal.pone.0228591⟩. ⟨inserm-02470346⟩
    Journal articles Epidemiological characteristics of cryptococcal meningoencephalitis associated with Cryptococcus neoformans var. grubii from HIV-infected patients in Madagascar: A cross-sectional study Rivonirina Andry Rakotoarivelo, Mihaja Raberahona, Tahinamandranto Rasamoelina, Andriamihaja Rabezanahary, Fetra Angelot Rakotomalala, Tiana Razafinambinintsoa, Thomas Bénet, Philippe Vanhems, Mamy Jean de Dieu Randria, Luisa Romanò, Massimo Cogliati, Muriel Cornet, Mala Rakoto Andrianarivelo
    PLoS Neglected Tropical Diseases, 2020, 14 (1), pp.e0007984. ⟨10.1371/journal.pntd.0007984⟩. ⟨inserm-02533743⟩
    Journal articles Biotinylated Oligo-α-(1 → 4)- d -galactosamines and Their N-Acetylated Derivatives: α-Stereoselective Synthesis and Immunology Application Ekaterina Kazakova, Dmitry Yashunsky, Vadim Krylov, Jean-Philippe Bouchara, Murielle Cornet, Isabel Valsecchi, Thierry Fontaine, Jean-Paul Latge, Nikolay Nifantiev
    Journal of the American Chemical Society, 2020, 142 (3), pp.1175-1179. ⟨10.1021/jacs.9b11703⟩. ⟨hal-02483263⟩
    Journal articles Aggregates Dramatically Alter Fibrin Ultrastructure Xabel García, Landry Seyve, Zera Tellier, Guillaume Chevreux, Nicolas Bihoreau, Benoît Polack, Francois Caton
    Biophysical Journal, 2020, 118, pp.172 - 181. ⟨10.1016/j.bpj.2019.10.034⟩. ⟨hal-03489348⟩
    Journal articles Coupling Polar Adhesion with Traction, Spring, and Torque Forces Allows High-Speed Helical Migration of the Protozoan Parasite Toxoplasma Georgios Pavlou, Bastien Touquet, Luis Vigetti, Patricia Renesto, Alexandre Bougdour, Delphine Débarre, Martial Balland, Isabelle Tardieux
    ACS Nano, 2020, 14 (6), pp.7121-7139. ⟨10.1021/acsnano.0c01893⟩. ⟨hal-02990387⟩
    Journal articles Phylogeography and Genetic Diversity of Francisella tularensis subsp. holarctica in France (1947–2018) Maëllys Kevin, Guillaume Girault, Yvan Caspar, Moulay Ali Cherfa, Christiane Mendy, Herbert Tomaso, Dolores Gavier-Widen, Raquel Escudero, Max Maurin, Benoît Durand, Claire Ponsart, Nora Madani
    Frontiers in Microbiology, 2020, 11, pp.287. ⟨10.3389/fmicb.2020.00287⟩. ⟨hal-03839672⟩
    Journal articles A pipeline to analyse time-course gene expression data Nelle Varoquaux, Elizabeth Purdom
    F1000Research, 2020, 9, pp.1447. ⟨10.12688/f1000research.27262.1⟩. ⟨hal-03375800⟩
    Journal articles Distinct Activities of Bacterial Condensins for Chromosome Management in Pseudomonas aeruginosa Virginia S. Lioy, Ivan Junier, Valentine Lagage, Isabelle Vallet, Frédéric Boccard
    Cell Reports, 2020, 33 (5), pp.108344. ⟨10.1016/j.celrep.2020.108344⟩. ⟨hal-03001981⟩
    Journal articles Modeling supercoiled DNA interacting with an anchored cluster of proteins: towards a quantitative estimation of chromosomal DNA supercoiling Jean-Charles Walter, Thibaut Lepage, Jérôme Dorignac, Frédéric Geniet, Andrea Parmeggiani, John Palmeri, Jean-Yves Bouet, Ivan Junier
    International Journal of Antimicrobial Agents, 2020, 56 (6), pp.106153. ⟨10.48550/arXiv.2002.00111⟩. ⟨hal-04851307⟩
    Journal articles Serotyping, host genes and cytokines response in human ocular toxoplasmosis Luz Eliana Mantilla-Muriel, Alejandro Hernández-De-Los-Ríos, Mónica Rincón, Alejandra De-La-Torre, Mateo Murillo-León, Néstor Cardona, Marie France Cesbron-Delauw, Corinne Mercier, Juan Carlos Sepúlveda-Arias, Jorge Enrique Gomez-Marin
    Microbial Pathogenesis, 2020, 148, pp.104465. ⟨10.1016/j.micpath.2020.104465⟩. ⟨hal-03735939⟩
    Journal articles An innovative plasmacytoid dendritic cell line-based cancer vaccine primes and expands antitumor T-cells in melanoma patients in a first-in-human trial Julie Charles, Laurence Chaperot, Dalil Hannani, Juliana Bruder Costa, Isabelle Templier, Sabiha Trabelsi, Hugo Gil, Anaick Moisan, Virginie Persoons, Harald Hegelhofer, Edith Schir, Jean-Louis Quesada, Christophe Mendoza, Caroline Aspord, Olivier Manches, Pierre Coulie, Amir Khammari, Brigitte Dreno, Marie-Thérèse Leccia, Joel Plumas
    OncoImmunology, 2020, 9 (1), pp.1738812. ⟨10.1080/2162402X.2020.1738812⟩. ⟨hal-03013777v1⟩
    Journal articles Advances in bacterial pathways for the biosynthesis of ubiquinone Sophie S. Abby, Katayoun Kazemzadeh, Charles Vragniau, Ludovic Pelosi, Fabien Pierrel
    Biochimica biophysica acta (BBA) - Bioenergetics, 2020, 1861 (11), pp.148259. ⟨10.1016/j.bbabio.2020.148259⟩. ⟨hal-02944115⟩
    Journal articles Evaluation of Rapid Sepsityper® protocol and specific MBT-Sepsityper module (Bruker Daltonics) for the rapid diagnosis of bacteremia and fungemia by MALDI-TOF-MS Léa Ponderand, Patricia Pavese, Danièle Maubon, Emmanuelle Giraudon, Thomas Girard, Caroline Landelle, Max Maurin, Yvan Caspar
    Annals of Clinical Microbiology and Antimicrobials, 2020, 19 (1), pp.60. ⟨10.1186/s12941-020-00403-w⟩. ⟨hal-03839663⟩
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