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    Homepage > Research > Teams > TREE > Publications
    TREE Team's publications

    Publications

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    Keywords

    • evolution
    • microorganisms
    • genomics
    • microbiota
    • membranes
    • antimicrobial resistance
    • metabolism
    • therapeutic and diagnostic engineering
    • immunity
    • evolution
    • microorganisms
    • genomics
    • microbiota
    • membranes
    • antimicrobial resistance
    • metabolism
    • therapeutic and diagnostic engineering
    • immunity
    HAL publications access
    Poster communications Diagnostic moléculaire de la toxoplasmose chez les patients immunodéprimés : évaluation de l’extraction automatisée de l’ADN par eMAG® sur 3 types de prélèvements artificiels Fanny Zhao, Lionnel Bulin, Hélène Fricker-Hidalgo, Quentin Renaud, Marie Gladys Robert, Cécile Garnaud, Hervé Pelloux, Marie-Pierre Brenier-Pinchart
    Congrès des Sociétés Françaises de Parasitologie (SFP) et de Mycologie médicale (SFMM), May 2019, Tours, France. ⟨hal-04957006⟩
    Journal articles Hepatic Brucelloma Diagnosis and Long-Term Treatment, France Marie Amsilli, Olivier Epaulard, Jean-Paul Brion, Patricia Pavese, Christian Letoublon, Isabelle Pelloux, Max Maurin
    Emerging Infectious Diseases, 2019, 25 (5), pp.1021-1023. ⟨10.3201/eid2505.180613⟩. ⟨hal-04997803⟩
    Journal articles Toxoplasma Hypervirulence in the Rat Model Parallels Human Infection and Is Modulated by the Toxo1 Locus Corinne Loeuillet, Anais Mondon, Salima Kamche, Véronique Curri, Jean Boutonnat, Pierre Cavailles, Marie-France Cesbron-Delauw
    Frontiers in Cellular and Infection Microbiology, 2019, 9, ⟨10.3389/fcimb.2019.00134⟩. ⟨hal-02117147⟩
    Journal articles Changes in Intrinsic Antibiotic Susceptibility during a Long-Term Evolution Experiment with Escherichia coli Otmane Lamrabet, Mikaël Martin, Richard Lenski, Dominique Schneider
    mBio, 2019, 10 (2), ⟨10.1128/mBio.00189-19⟩. ⟨hal-02283128⟩
    Poster communications Molecular diagnosis of toxoplasmosis in immunocompromised patients : evaluation of automated DNA extraction using eMAG® Fanny Zhao, Lionnel Bulin, Hélène Fricker-Hidalgo, Quentin Renaud, Marie Gladys Robert, Cécile Garnaud, Hervé Pelloux, Marie-Pierre Brenier-Pinchart
    29th ECCMID (European Congress of Clinical Microbiology and Infectious Diseases), Apr 2019, Amsterdam, Netherlands. ⟨hal-04957052⟩
    Journal articles The dense granule protein 8 (GRA8) is a component of the sub-pellicular cytoskeleton in Toxoplasma gondii Rubén Darío Díaz-Martín, Corinne Mercier, Carmen Gómez de León, Ricardo Mondragón González, Sirenia González Pozos, Emmanuel Ríos-Castro, Raúl Arguello García, Barbara Fox, David Bzik, Ricardo Mondragón Flores
    Parasitology Research, 2019, 118 (6), pp.1899-1918. ⟨10.1007/s00436-019-06298-7⟩. ⟨hal-04818600⟩
    Journal articles Molecular-Type Specific Multiplex PCR produces a distinct VNII PCR pattern among Cryptococcus neoformans species complex Massimo Cogliati, Mala Rakoto Andrianarivelo, Mohamed Ellabib, Emmanuel Nnadi, Muriel Cornet
    Medical Mycology, 2019, 57 (3), pp.384-386. ⟨10.1093/mmy/myy022⟩. ⟨hal-04997898⟩
    Theses Approche métabolomique pour l'étude de l'évolution adaptative de Pseudomonas aeruginosa au cours des infections pulmonaires chroniques dans la mucoviscidose Oriane Moyne
    Pneumologie et système respiratoire. Université Grenoble Alpes, 2019. Français. ⟨NNT : 2019GREAS003⟩. ⟨tel-02402547⟩
    Conference papers Biosynthesis of Ubiquinone without 02: how and why? Fabien Pierrel
    «EVOLUTION, BIOGENESIS AND DYNAMICS OF ENERGY TRANSDUCING MEMBRANES», LABEX DYNAMO, Mar 2019, Paris, France. ⟨hal-04931615⟩
    Journal articles Prealbumin, platelet factor 4 and S100A12 combination at baseline predicts good response to TNF alpha inhibitors in rheumatoid arthritis Minh Vu Chuong Nguyen, Athan Baillet, Xavier Romand, Candice Trocme, Anaïs Courtier, Hubert Marotte, Thierry Thomas, Martin Soubrier, Pierre Miossec, Jacques Tebib, Laurent Grange, Bertrand Toussaint, Thierry Lequerré, Olivier Vittecoq, Philippe Gaudin
    Joint Bone Spine, 2019, 86 (2), pp.195-201. ⟨10.1016/j.jbspin.2018.05.006⟩. ⟨hal-02416032⟩
    Journal articles Prevalence, geographic risk factor, and development of a standardized protocol for fungal isolation in cystic fibrosis: Results from the international prospective study “MFIP” Laurence Delhaes, Kada Touati, Muriel Cornet, Rafael Cantón, Françoise Botterel, Eric Dannaoui, Florent Morio, Patrice Le Pape, Frédéric Grenouillet, Loïc Favennec, Solene Le Gal, Gilles Nevez, Alain Duhamel, Andrew M Borman, Veroniek Saegeman, Katrien Lagrou, Elia Gomez, Maiz-Luis Carro, Odile Faure-Cognet, Silvia Campana, Walter Buzina, Sharon Chen, Wieland Meyer, Emmanuel Roilides, Maria Simitsopoulou, Esther Manso, Lisa Cariani, Arianna Biffi, Ersilia Fiscarelli, Gabriella Ricciotti, Marc Pihet, Jean-Philippe Bouchara
    Journal of Cystic Fibrosis, 2019, 18 (2), pp.212-220. ⟨10.1016/j.jcf.2018.10.001⟩. ⟨hal-02316590⟩
    Journal articles A proliferation‐inducing ligand–mediated anti‐inflammatory response of astrocytes in multiple sclerosis Laurie Baert, Mahdia Benkhoucha, Natalia Popa, Mashal C Ahmed, Benoit Manfroi, Jean Boutonnat, Nathalie Sturm, Gilda Raguenez, Marine Tessier, Olivier Casez, Romain Marignier, Mitra Ahmadi, Alexis Broisat, Catherine Ghezzi, Cyril Rivat, Corinne Sonrier, Michael Hahne, Dominique L. Baeten, Romain R Vivès, Hugues Lortat-Jacob, Patrice N. Marche, Pascal Schneider, Hans P Lassmann, José Boucraut, Patrice H Lalive, Bertrand Huard
    Annals of Neurology, 2019, 85 (3), pp.406-420. ⟨10.1002/ana.25415⟩. ⟨inserm-02332844⟩
    Journal articles A Two-Enzyme Adaptive Unit within Bacterial Folate Metabolism A.F. Schober, A.D. Mathis, C. Ingle, J.O. Park, Lin Chen, J. D. Rabinowitz, Ivan Junier, Olivier Rivoire, K.A. Reynolds
    Cell Reports, 2019, 27 (11), pp.3359-3370.e7. ⟨10.1016/j.celrep.2019.05.030⟩. ⟨hal-02283154⟩
    Journal articles Ubiquinone Biosynthesis over the Entire O2 Range: Characterization of a Conserved O2-Independent Pathway Ludovic Pelosi, Chau-Duy-Tam Vo, Sophie Saphia Abby, Laurent Loiseau, Bérengère Rascalou, Mahmoud Hajj Chehade, Bruno Faivre, Mathieu Goussé, Clothilde Chenal, Nadia Touati, Laurent Binet, David Cornu, Cameron David Fyfe, Marc Fontecave, Frédéric Barras, Murielle Lombard, Fabien Pierrel
    mBio, 2019, 10 (4), ⟨10.1128/mBio.01319-19⟩. ⟨hal-02183791⟩
    Journal articles Reducing the ionizing radiation background does not significantly affect the evolution of Escherichia coli populations over 500 generations Nathanael Lampe, Pierre Marin, Marianne Coulon, Pierre Micheau, Lydia Maigne, David Sarramia, Fabrice Piquemal, Sébastien Incerti, David Biron, Camille Ghio, Télesphore Sime-Ngando, Thomas Hindré, Vincent Breton
    Scientific Reports, 2019, 9 (1), pp.14891. ⟨10.1038/s41598-019-51519-9⟩. ⟨hal-02337251⟩
    Journal articles Bacterial genome architecture shapes global transcriptional regulation by DNA supercoiling Bilal El houdaigui, Raphaël Forquet, Thomas Hindré, Dominique Schneider, William Nasser, Sylvie Reverchon, Sam Meyer
    Nucleic Acids Research, 2019, 47 (11), pp.5648-5657. ⟨10.1093/nar/gkz300⟩. ⟨hal-02127001⟩
    Book sections The X-CGD PLB-985 Cell Model for NOX2 Structure-Function Analysis Sylvain Beaumel, Marie José Stasia
    Ulla G. Knaus; Thomas L. Leto. NADPH Oxidases: Methods and Protocols, Methods in Molecular Biology, 1982, Springer Nature, 2019, Methods Molecular Biology, 978-1-4939-9423-6. ⟨hal-02082119⟩
    Journal articles Fibrinography: A Multiwavelength Light-Scattering Assay of Fibrin Structure Carhel Dassi, Landry Seyve, Xabel Garcia, Emmanuelle Bigo, François Caton, Benoit Polack
    HemaSphere, 2019, 3 (1), pp.e166. ⟨10.1097/HS9.0000000000000166⟩. ⟨hal-02406331⟩
    Journal articles A Soluble Metabolon Synthesizes the Isoprenoid Lipid Ubiquinone Mahmoud Hajj Chehade, Ludovic Pelosi, Cameron David Fyfe, Laurent Loiseau, Bérengère Rascalou, Sabine Brugière, Katayoun Kazemzadeh, Chau-Duy-Tam Vo, Lidia Ciccone, Laurent Aussel, Yohann Couté, Marc Fontecave, Frédéric Barras, Murielle Lombard, Fabien Pierrel
    Cell Chemical Biology, 2019, 26 (4), pp.482-492.e7. ⟨10.1016/j.chembiol.2018.12.001⟩. ⟨hal-02071798⟩
    Journal articles Inferring Diploid 3D Chromatin Structures from Hi-C Data Ra Gesine Cauer, Gurkan Yardimci, Jean-Philippe Vert, Nelle Varoquaux, William Stafford Noble
    19th International Workshop on Algorithms in Bioinformatics (WABI 2019), 2019, ⟨10.4230/LIPIcs.WABI.2019.11⟩. ⟨hal-02444745⟩
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