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Publications
TREE Team's publications
HAL publications access
Patents
Réacteur intestinal implantable
Philippe Cinquin, Dominique Schneider, Max Maurin, Donald K Martin, Sarra El Ichi, Abdelkader Zebda, Jean-Pierre Alcaraz, Fabian Reche, Patrick Tuvignon
France, Patent n° : FR3034307. 2016. ⟨hal-02010289⟩
Reports
EvoEvo Deliverable 1.5
Dominique Schneider, Guillaume Beslon, José-Luis Carrasco, Santiago F. Elena, Otmane Lamrabet, A. Willemsen
. [Research Report] INRIA Grenoble - Rhône-Alpes. 2016. ⟨hal-01577130⟩
Reports
EvoEvo Deliverable 1.6
Dominique Schneider, Guillaume Beslon, Santiago F. Elena, Otmane Lamrabet
. [Research Report] INRIA Grenoble - Rhône-Alpes. 2016. ⟨hal-01577131⟩
Journal articles
Mechanistic Details of Early Steps in Coenzyme Q Biosynthesis Pathway in Yeast
Laurie-Anne Payet, Mélanie Leroux, John C. Willison, Akio Kihara, Ludovic Pelosi, Fabien Pierrel
Cell Chemical Biology, 2016, 23 (10), pp.1241 - 1250. ⟨10.1016/j.chembiol.2016.08.008⟩. ⟨hal-01424510⟩
Conference papers
In Silico Experimental Evolution Highlights the Influence of Environmental Seasonality on Bacterial Diversification
Charles Rocabert, Carole Knibbe, Jessika Consuegra, Dominique Schneider, Guillaume Beslon
2nd EvoEvo Workshop, satellite workshop of CCS2016, Sep 2016, Amsterdam, Netherlands. ⟨hal-01375677⟩
Journal articles
Evolution of Ubiquinone Biosynthesis: Multiple Proteobacterial Enzymes with Various Regioselectivities To Catalyze Three Contiguous Aromatic Hydroxylation Reactions
Ludovic Pelosi, Anne-Lise Ducluzeau, Laurent Loiseau, Frédéric Barras, Dominique Schneider, Ivan Junier, Fabien Pierrel
mSystems, 2016, 1 (4), pp.00091-16. ⟨10.1128/mSystems.00091-16⟩. ⟨hal-01424513⟩
Journal articles
Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment.
Tobias Grosskopf, Jessica Consuegra, Joël Gaffé, John Willison, Richard E Lenski, Orkun S. Soyer, Dominique Schneider
BMC Evolutionary Biology, 2016, 16 (1), pp.163. ⟨10.1186/s12862-016-0733-x⟩. ⟨hal-01360095⟩
Journal articles
Tempo and mode of genome evolution in a 50,000-generation experiment
Olivier Tenaillon, Jeffrey E. Barrick, Noah Ribeck, Daniel E. Deatherage, Jeffrey L. Blanchard, Aurko Dasgupta, Gabriel C. Wu, Sébastien Wielgoss, Stéphane Cruveiller, Claudine Médigue, Dominique Schneider, Richard E. Lenski
Nature, 2016, 536 (7615), pp.165 - 170. ⟨10.1038/nature18959⟩. ⟨hal-01653393⟩
Journal articles
Phenotypes Associated with Knockouts of Eight Dense Granule Gene Loci (GRA2-9) in Virulent Toxoplasma gondii.
Leah M Rommereim, Valeria Bellini, Barbara A Fox, Graciane Pètre, Camille Rak, Bastien Touquet, Delphine Aldebert, Jean-François Dubremetz, Marie-France Cesbron-Delauw, Corinne Mercier, David J Bzik
PLoS ONE, 2016, 11 (7), pp.e0159306. ⟨10.1371/journal.pone.0159306⟩. ⟨hal-01539047⟩
Patents
Réacteur intestinal implantable
P. Cinquin, Dominique Schneider, Max Maurin, Donald K Martin, Sarra El Ichi, A Zebda, Jean-Pierre Alcaraz, Fabian Reche, Patrick Tuvignon, Jacques Thélu, Audrey Legouëllec, Bertrand Toussaint
France, N° de brevet: n° WO 2016/156612 A1. 2016. ⟨hal-02010232⟩
Journal articles
Insights into the Mechanisms of Basal Coordination of Transcription Using a Genome-Reduced Bacterium
Ivan Junier, E. besray Unal, Eva Yus, Verónica Lloréns-Rico, Luis Serrano
Cell Systems, 2016, 2 (6), pp.391 - 401. ⟨10.1016/j.cels.2016.04.015⟩. ⟨hal-01653839⟩
Reports
EvoEvo Deliverable 1.2
Santiago F. Elena, Dominique Schneider, Guillaume Beslon, Otmane Lamrabet
[Research Report] INRIA Grenoble - Rhône-Alpes. 2016. ⟨hal-01577126⟩
Reports
EvoEvo Deliverable 1.4
Santiago F. Elena, Guillaume Beslon, Otmane Lamrabet, Dominique Schneider
. [Research Report] INRIA Grenoble - Rhône-Alpes. 2016. ⟨hal-01577128⟩
Reports
EvoEvo Deliverable 1.3
Santiago F. Elena, Guillaume Beslon, Otmane Lamrabet, Dominique Schneider
. [Research Report] INRIA Grenoble - Rhône-Alpes. 2016. ⟨hal-01577127⟩
Journal articles
Coenzyme Q Biosynthesis: Evidence for a Substrate Access Channel in the FAD-Dependent Monooxygenase Coq6
Alexandre Ismail, Vincent Leroux, Myriam Smadja, Lucie Gonzalez, Murielle Lombard, Fabien Pierrel, Caroline Mellot-Draznieks, Marc Fontecave
PLoS Computational Biology, 2016, 12 (1), pp.e1004690. ⟨10.1371/journal.pcbi.1004690⟩. ⟨hal-01424489⟩
Patents
Implantable reactor for gut
Philippe Cinquin, Dominique Schneider, Max Maurin, Abdelkader Zebda, Jean-Pierre Alcaraz, Audrey Le Gouellec, Bertrand Toussaint, Jacques Thélu
France, Patent n° : WO 2016/156612 A1. 2016. ⟨hal-04950898⟩
Journal articles
Empirical Micafungin Treatment and Survival Without Invasive Fungal Infection in Adults With ICU-Acquired Sepsis, Candida Colonization, and Multiple Organ Failure The EMPIRICUS Randomized Clinical Trial
Jean-François Timsit, Élie Azoulay, Carole Schwebel, Pierre Emmanuel Charles, Muriel Cornet, Bertrand Souweine, Kada Klouche, Samir Jaber, Jean-Louis Trouillet, Fabrice Bruneel, Laurent Argaud, Joel Cousson, Ferhat Meziani, Didier Gruson, Adeline Paris, Michael Darmon, Maïté Garrouste-Orgeas, Jean-Christophe Navellou, Arnaud Foucrier, Bernard Allaouchiche, Vincent Das, Jean-Pierre Gangneux, Stéphane Ruckly, Danièle Maubon, Vincent Jullien, Michel Wolff
Journal of the American Medical Association, 2016, 316 (15), pp.1555--1564. ⟨10.1001/jama.2016.14655⟩. ⟨hal-01405822⟩
Journal articles
Lipid extraction from HeLa cells, quantification of lipids, formation of large unilamellar vesicles (LUVs) by extrusion and in vitro protein-lipid binding assays, analysis of the incubation product by Transmission Electron Microscopy (TEM) and by flotation across a discontinuous sucrose gradient
Amina Bittame, Jodie Lopez, Grégory Effantin, Nicolas Blanchard, Marie-France Cesbron-Delauw, Jean Gagnon, Corinne Mercier
Bio-protocol , 2016, 6 (20), pp.1-11. ⟨10.21769/BioProtoc.1963⟩. ⟨hal-01679014⟩
Journal articles
Cerebellar Ataxia and Coenzyme Q Deficiency through Loss of Unorthodox Kinase Activity
Jonathan a. Stefely, Floriana Licitra, Leila Laredj, Andrew g. Reidenbach, Zachary a. Kemmerer, Anais Grangeray, Tiphaine Jaeg-Ehret, Catherine e. Minogue, Arne Ulbrich, Paul d. Hutchins, Emily m. Wilkerson, Zheng Ruan, Deniz Aydin, Alexander s. Hebert, Xiao Guo, Elyse c. Freiberger, Laurence Reutenauer, Adam Jochem, Maya Chergova, Isabel e. Johnson, Danielle c. Lohman, Matthew j.P. Rush, Nicholas w. Kwiecien, Pankaj k. Singh, Anna i. Schlagowski, Brendan j. Floyd, Ulrika Forsman, Pavel j. Sindelar, Michael s. Westphall, Fabien Pierrel, Joffrey Zoll, Matteo Dal peraro, Natarajan Kannan, Craig a. Bingman, Joshua j. Coon, Philippe Isope, Hélène Puccio, David j. Pagliarini
Molecular Cell, 2016, 63 (4), pp.608 - 620. ⟨10.1016/j.molcel.2016.06.030⟩. ⟨hal-01424495⟩
Theses
Dynamiques théorique et expérimentale des taux de mutations
Larissa Viraphong Caudwell
Microbiologie et Parasitologie. Université Grenoble Alpes, 2015. Français. ⟨NNT : 2015GREAV038⟩. ⟨tel-01686310⟩
HAL publications access
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