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    Homepage > Research > Teams > TREE > Publications
    TREE Team's publications

    Publications

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    Keywords

    • evolution
    • microorganisms
    • genomics
    • microbiota
    • membranes
    • antimicrobial resistance
    • metabolism
    • therapeutic and diagnostic engineering
    • immunity
    • evolution
    • microorganisms
    • genomics
    • microbiota
    • membranes
    • antimicrobial resistance
    • metabolism
    • therapeutic and diagnostic engineering
    • immunity
    HAL publications access
    Journal articles Leveraging a powerful allogeneic dendritic cell line towards neoantigen-based cancer vaccines Dalil Hannani, Estelle Leplus, Karine Laulagnier, Laurence Chaperot, Joël Plumas
    Genes and Cancer, 2023, 14, pp.3-11. ⟨10.18632/genesandcancer.229⟩. ⟨hal-04297113⟩
    Conference papers Unraveling the relative emergence of quinones biosynthetic pathways Sophie-Carole Chobert, Ivan Junier, Fabien Pierrel, Sophie Abby
    Rencontres Alhy/AIEM, Jan 2023, Grenoble, France. ⟨hal-04971115⟩
    Journal articles Tumour-like breast lesions due to ectopic schistosomiasis in a European traveller Oriane Palaprat, Eleni Nika, Aurélie Delouche, Fanny Quenard, Maxime Chevalier, Danièle Maubon, Hervé Pelloux, Marie Robert
    Journal of Travel Medicine, 2023, 30 (1), ⟨10.1093/jtm/taac067⟩. ⟨hal-04886195⟩
    Preprints, Working Papers, ... Identification of protein secretion systems in bacterial genomes using MacSyFinder version 2 Sophie S. Abby, Rémi Denise, Eduardo Pc Rocha
    2023. ⟨hal-04257010⟩
    Journal articles A New Plasmacytoid Dendritic Cell-Based Vaccine in Combination with Anti-PD-1 Expands the Tumor-Specific CD8+ T Cells of Lung Cancer Patients Dalil Hannani, Estelle Leplus, David Laurin, Benjamin Caulier, Caroline Aspord, Natacha Madelon, Ekaterina Bourova-Flin, Christian Brambilla, Elisabeth Brambilla, Anne-Claire Toffart, Karine Laulagnier, Laurence Chaperot, Joël Plumas
    International Journal of Molecular Sciences, 2023, 24 (3), pp.1897. ⟨10.3390/ijms24031897⟩. ⟨hal-04297039⟩
    Journal articles Diversification of ubiquinone biosynthesis via gene duplications, transfers, losses, and parallel evolution Katayoun Kazemzadeh, Ludovic Pelosi, Clothilde Chenal, Sophie-Carole Chobert, Mahmoud Hajj Chehade, Margaux Jullien, Laura Flandrin, William Schmitt, Qiqi He, Emma Bouvet, Manon Jarzynka, Nelle Varoquaux, Ivan Junier, Fabien Pierrel, Sophie S. Abby
    Molecular Biology and Evolution, 2023, 40 (10), pp.msad219. ⟨10.1093/molbev/msad219⟩. ⟨hal-04256893⟩
    Journal articles Gradient concentration strip–specific epidemiological cut-off values of antifungal drugs in various yeast species and five prevalent Aspergillus species complexes Victor Mercier, Valérie Letscher-Bru, Marie-Elisabeth Bougnoux, Laurence Delhaes, Françoise Botterel, Danièle Maubon, Frédéric Dalle, Alexandre Alanio, Sandrine Houzé, Eric Dannaoui, Carole Cassagne, Sophie Cassaing, Marie-Fleur Durieux, Arnaud Fekkar, Jean-Philippe Bouchara, Jean-Pierre Gangneux, Julie Bonhomme, Damien Dupont, Damien Costa, Boualem Sendid, Taieb Chouaki, Nathalie Bourgeois, Antoine Huguenin, Sophie Brun, Caroline Mahinc, Lilia Hasseine, Solène Le Gal, Anne‐Pauline Bellanger, Eric Bailly, Florent Morio, Céline Nourrisson, Nicole Desbois-Nogard, Estelle Perraud, Anne Debourgogne, Hélène Yera, Laurence Lachaud, Milène Sasso
    Clinical Microbiology and Infection, 2023, 29 (5), pp.652.e9-652.e15. ⟨10.1016/j.cmi.2022.11.030⟩. ⟨hal-03994435v2⟩
    Journal articles Rapid and automated screening of carbapenemase- and ESBL-producing Gram-negative bacteria from rectal swabs using chromogenic agar media and the ScanStation device Julien Peyroux, Iyad Almahmoudh, Emelise Prebe-Coquerel, Thomas Girard, Max Maurin, Yvan Caspar
    Microbiology Spectrum, 2023, 11 (5), pp.02723-23. ⟨10.1128/spectrum.02723-23⟩. ⟨hal-04631124⟩
    Journal articles Multi-Method Quantification of Acetyl-Coenzyme A and Further Acyl-Coenzyme A Species in Normal and Ischemic Rat Liver Malgorzata Tokarska-Schlattner, Nour Zeaiter, Valérie Cunin, Stéphane Attia, Cécile Meunier, Laurence Kay, Amel Achouri, Edwige Hiriart-Bryant, Karine Couturier, Cindy Tellier, Abderrafek El Harras, Bénédicte Elena-Herrmann, Saadi Khochbin, Audrey Le Gouellec, Uwe Schlattner
    International Journal of Molecular Sciences, 2023, 24 (19), pp.14957. ⟨10.3390/ijms241914957⟩. ⟨hal-04243491⟩
    Book sections Unveiling the links between peptide identification and differential analysis FDR controls by means of a practical introduction to knockoff filters Lucas Etourneau, Nelle Varoquaux, Thomas Burger
    Statistical Analysis of Proteomic Data, 2426, Springer US, pp.1-24, 2023, Methods in Molecular Biology, ⟨10.1101/2021.08.20.454134⟩. ⟨hal-03373565⟩
    Journal articles DNA supercoiling in bacteria: state of play and challenges from a viewpoint of physics based modeling Ivan Junier, Elham Ghobadpour, Olivier Espeli, Ralf Everaers
    Frontiers in Microbiology, 2023, 14, pp.1192831. ⟨10.3389/fmicb.2023.1192831⟩. ⟨hal-04788472⟩
    Journal articles Inulin Prebiotic Protects against Lethal Pseudomonas aeruginosa Acute Infection via γδ T Cell Activation Emilie Boucher, Caroline Plazy, Audrey Le Gouellec, Bertrand Toussaint, Dalil Hannani
    Nutrients, 2023, 15 (13), pp.3037. ⟨10.3390/nu15133037⟩. ⟨hal-04297026⟩
    Journal articles Francisella tularensis PCR detection in Cape hares (Lepus capensis) and wild rabbits (Oryctolagus cuniculus) in Algeria Imene Ammam, Camille Brunet, Nouria Boukenaoui-Ferrouk, Julien Peyroux, Sylvie Berthier, Jean Boutonnat, Karim Rahal, Idir Bitam, Max Maurin
    Scientific Reports, 2022, 12 (1), pp.21451. ⟨10.1038/s41598-022-25188-0⟩. ⟨hal-04886120⟩
    Journal articles Extracellular Vesicles from 50,000 Generation Clones of the Escherichia coli Long-Term Evolution Experiment David Laurin, Corinne Mercier, Nyamekye Quansah, Julie Suzanne Robert, Yves Usson, Dominique Schneider, Thomas Hindré, Béatrice Schaack
    International Journal of Molecular Sciences, 2022, 23 (23), pp.14580. ⟨10.3390/ijms232314580⟩. ⟨hal-03893516⟩
    Preprints, Working Papers, ... Inulin prebiotic reinforces host cancer immunosurveillance via γδ T cell activation Emilie Boucher, Caroline Plazy, Mathias Richard, Antonia Suau, Irène Mangin, Muriel Cornet, Delphine Aldebert, Bertrand Toussaint, Dalil Hannani
    2022. ⟨hal-03857015⟩
    Journal articles Kappa Free Light Chain Biomarkers Are Efficient for the Diagnosis of Multiple Sclerosis: A Large Multicenter Cohort Study Michael Levraut, Sabine Laurent-Chabalier, Xavier Ayrignac, Kévin Bigaut, Manon Rival, Sanae Squalli, Hélène Zéphir, Tifanie Alberto, Jean-David Pekar, Jonathan Ciron, Damien Biotti, Bénédicte Puissant-Lubrano, Jean-Philippe Camdessanché, Yannick Tholance, Olivier Casez, Bertrand Toussaint, Jeanne Marion, Thibault Moreau, Daniela Lakomy, Audrey Thomasset, Elisabeth Maillart, Delphine Sterlin, Aude Maurousset, Auriane Rocher, David Axel Laplaud, Edith Bigot-Corbel, Pierre-Olivier Bertho, Jean Pelletier, Joseph Boucraut, Pierre Labauge, Thierry Vincent, Jérôme de Sèze, Isabelle Jahn, Barbara Seitz-Polski, Eric Thouvenot, Christine Lebrun-Frenay
    Neurology Neuroimmunology & Neuroinflammation, 2022, 10 (1), pp.e200049. ⟨10.1212/NXI.0000000000200049⟩. ⟨inserm-04003586⟩
    Journal articles Microbiota-derived extracellular vesicles detected in human blood from healthy donors Béatrice Schaack, Thomas Hindré, Nyamekye Quansah, Dalil Hannani, Corinne Mercier, David Laurin
    International Journal of Molecular Sciences, 2022, 23 (22), pp.13787. ⟨10.3390/ijms232213787⟩. ⟨hal-03893521⟩
    Journal articles Bioengineering of Escherichia coli Nissle 1917 for Production and Excretion of Spermidine, a Key Metabolite in Human Health Clément Caffaratti, Caroline Plazy, Valérie Cunin, Bertrand Toussaint, Audrey Le Gouellec
    Metabolites, 2022, 12 (11), pp.1061. ⟨10.3390/metabo12111061⟩. ⟨hal-04886062⟩
    Journal articles Specific Mutations in the Cholesterol-Binding Site of APP Alter Its Processing and Favor the Production of Shorter, Less Toxic Aβ Peptides Linda Hanbouch, Béatrice Schaack, Amal Kasri, Gaelle Fontaine, Eleni Gkanatsiou, Gunnar Brinkmalm, Elena Camporesi, Erik Portelius, Kaj Blennow, Gilles Mourier, Nicolas Gilles, Mark Millan, Henrik Zetterberg, Catherine Marquer, Lydie Boussicault, Marie-Claude Potier
    Molecular Neurobiology, 2022, 59 (11), pp.7056-7073. ⟨10.1007/s12035-022-03025-9⟩. ⟨hal-04467164⟩
    Theses Etude et application de nouvelles techniques d'imagerie et d'intelligence artificielle pour l'identification bactérienne Julien Peyroux
    Médecine humaine et pathologie. Université Grenoble Alpes [2020-..], 2022. Français. ⟨NNT : 2022GRALS026⟩. ⟨tel-03922686⟩
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