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    Homepage > Research > Teams > TREE > Publications
    TREE Team's publications

    Publications

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    Keywords

    • evolution
    • microorganisms
    • genomics
    • microbiota
    • membranes
    • antimicrobial resistance
    • metabolism
    • therapeutic and diagnostic engineering
    • immunity
    • evolution
    • microorganisms
    • genomics
    • microbiota
    • membranes
    • antimicrobial resistance
    • metabolism
    • therapeutic and diagnostic engineering
    • immunity
    HAL publications access
    Poster communications Identification of Metabolic Biomarkers predictive of the severity of COVID-19 in hospitalized patients Audrey Le Gouellec, Sylvie Berthier, Candice Trocme, V. Cunin, Florence Castelli, Caroline Plazy, Emeline Chu-Van, Federica Fiorini, Estelle Pujos-Guillot, François Fenaille, Bertrand Toussaint, Olivier Epaulard
    14èmes JS RFMF, Nov 2021, Aussois, France. ⟨hal-04959019⟩
    Preprints, Working Papers, ... circHiC: circular visualization of Hi-C data and integration of genomic data Ivan Junier, Nelle Varoquaux
    2021. ⟨hal-02945275⟩
    Book sections Recombinant Transcription Factors (TFs) Fused to ZEBRA Minimal Transduction Domain (MD) for Modulation of mRNA Transcripts Benjamin Caulier, Jean-Luc Lenormand, David Laurin
    Cell Penetrating Peptides, 2383, Springer US, pp.275-291, 2021, Methods in Molecular Biology, 978-1-0716-1751-9. ⟨10.1007/978-1-0716-1752-6_19⟩. ⟨hal-03969590⟩
    Journal articles Cell Wall Compositions of Sorghum bicolor Leaves and Roots Remain Relatively Constant Under Drought Conditions Tess Scavuzzo-Duggan, Nelle Varoquaux, Mary Madera, John P Vogel, Jeffery Dahlberg, Robert Hutmacher, Michael Belcher, Jasmine Ortega, Devin Coleman-Derr, Peggy Lemaux, Elizabeth Purdom, Henrik V Scheller
    Frontiers in Plant Science, 2021, 12, ⟨10.3389/fpls.2021.747225⟩. ⟨hal-03428264⟩
    Preprints, Working Papers, ... The [PSI+] prion and HSP104 modulate cytochrome c oxidase deficiency caused by deletion of COX12 Pawan Kumar Saini, Hannah Dawitz, Andreas Aufschnaiter, Jinsu Thomas, Amélie Amblard, James Stewart, Nicolas Thierry-Mieg, Martin Ott, Fabien Pierrel
    2021. ⟨hal-03402829⟩
    Journal articles Identification of a predictive metabolic signature of response to immune checkpoint inhibitors in non-small cell lung cancer: METABO-ICI clinical study protocol Sarah Sannicolo, Matteo Giaj Levra, Audrey Le Gouellec, Caroline Aspord, Julien Boccard, Laurence Chaperot, Bertrand Toussaint, Denis Moro-Sibilot, Dalil Hannani, Anne-Claire Toffart
    Respiratory Medicine and Research, 2021, 80, pp.100845. ⟨10.1016/j.resmer.2021.100845⟩. ⟨hal-03418402⟩
    Preprints, Working Papers, ... Elicitation of potent SARS-CoV-2 neutralizing antibody responses through immunization using a versatile adenovirus-inspired multimerization platform Christopher Chevillard, Axelle Amen, S Besson, D Hannani, Isabelle Bally, V Dettling, Evelyne Gout, Christophe J Moreau, Marlyse Buisson, Salomé Gallet, Daphna Fenel, Emilie Vassal-Stermann, Guy Schoehn, Pascal Poignard, Marie-Claire Dagher, Pascal Fender
    2021. ⟨hal-03409188⟩
    Poster communications Development and 3-year assessment of a real-time PCR assay for the diagnosis of microsporidiosis on a fully-automated platform Marie Gladys Robert, Danièle Maubon, Céline Dard, Cécile Garnaud
    Congrès des Sociétés Françaises de Parasitologie (SFP) et de Mycologie médicale (SFMM), Oct 2021, Lyon, France. ⟨hal-04956902⟩
    Conference papers Pseudomonas aeruginosa-derived metabolites modulate immunity and correlate with respiratory functions in Cystic Fibrosis patients Caroline Plazy, Audrey Le Gouellec, Oriane Moyne, Max Maurin, Bertrand Toussaint, Dalil Hannani
    es modulate immunity and correlate with respiratory functions in Cystic Fibrosis patients. Colloque Pseudomonas, Oct 2021, Malbuisson, France. ⟨hal-04958159⟩
    Conference papers MMAVAx : Un vaccin contre Pseudomonas aeruginosa à l’aide de cellules inactivées conservant une activité métabolique Sarah Thiroux, Elodie Meynet, David Laurin, Jean Luc Lenormand, Boubou Camara, Bertrand Toussaint, Audrey Le Gouellec
    Colloque Pseudomonas, Oct 2021, Malbuisson, France. ⟨hal-04958998⟩
    Preprints, Working Papers, ... Inference of genome 3D architecture by modeling overdispersion of Hi-C data Nelle Varoquaux, William Noble, Jean-Philippe Vert
    2021. ⟨hal-03375900⟩
    Habilitation à diriger des recherches Vers une approche holistique de l’étude de l’interaction hôte pathogène et applications médicales Audrey Le Gouellec
    Bactériologie. Université Grenoble Alpes, 2021. ⟨tel-04955358⟩
    Journal articles Preclinical Evaluation of Sodium Selenite in Mice: Toxicological and Tumor Regression Studies after Striatum Implantation of Human Glioblastoma Stem Cells Louis Larrouquère, Sylvie Berthier, Benoit Chovelon, Catherine Garrel, Véronique Vacchina, Hugues Paucot, Jean Boutonnat, Patrice Faure, Florence Hazane-Puch
    International Journal of Molecular Sciences, 2021. ⟨hal-04816013⟩
    Theses Modèles cellulaires appliqués à la compréhension de l'épidémiologie et de la pathogénicité de Francisella tularensis Aurélie Hennebique
    Médecine humaine et pathologie. Université Grenoble Alpes [2020-..], 2021. Français. ⟨NNT : 2021GRALS021⟩. ⟨tel-03537994⟩
    Poster communications Mitochondrial dynamics and coenzyme Q biosynthesis in S. cerevisiae Laetitia Cavellini, Ludovic Pelosi, Mahmoud Hajj Chehade, Bérengère Rascalou, Fabien Pierrel, Mickael M. Cohen
    21ème congrès du Groupe Français de Bioenergetique, Sep 2021, En visioconférence (COVID), France. ⟨hal-03965453⟩
    Conference papers Anaerobic UQ biosynthetic pathway in Escherichia coli: molecular aspects and physiological role Katayoun Kazemzadeh, Sophie Abby, Emmanuel Sechet, Bouveret Emmanuelle, Frédéric Barras, Ludovic Pelosi, Fabien Pierrel
    Groupe Français de Bioénergétique (GFB), Sep 2021, Visio conference, France. ⟨hal-04977006⟩
    Journal articles The biosynthetic pathway of ubiquinone contributes to pathogenicity of Francisella Running title: Ubiquinone and Francisella pathogenicity Katayoun Kazemzadeh, Mahmoud Hajj Chehade, Gautier Hourdoir, Camille Dorothée Brunet, Yvan Caspar, Laurent Loiseau, Frederic Barras, Fabien Pierrel, Ludovic Pelosi
    Journal of Bacteriology, 2021, ⟨10.1128/JB.00400-21⟩. ⟨hal-03357541⟩
    Journal articles Can We Improve Antifungal Susceptibility Testing? Charlotte Durand, Danièle Maubon, Muriel Cornet, Yan Wang, Delphine Aldebert, Cécile Garnaud
    Frontiers in Cellular and Infection Microbiology, 2021, 11, ⟨10.3389/fcimb.2021.720609⟩. ⟨hal-03703112⟩
    Journal articles Multiscale Dynamic Structuring of Bacterial Chromosomes Virginia Lioy, Ivan Junier, Frédéric Boccard
    Annual Review of Microbiology, 2021, 75 (1), ⟨10.1146/annurev-micro-033021-113232⟩. ⟨hal-03335214⟩
    Journal articles Early-Onset Cerebral Amyloid Angiopathy and Alzheimer Disease Related to an APP Locus Triplication Lou Grangeon, Kévin Cassinari, Stéphane Rousseau, Bernard Croisile, Maïté Formaglio, Olivier Moreaud, Jean Boutonnat, Nathalie Le Meur, Manuele Miné, Thibault Coste, Eva Pipiras, Elisabeth Tournier-Lasserve, Anne Rovelet-Lecrux, Dominique Campion, David Wallon, Gaël Nicolas
    Neurology Genetics, 2021, 7 (5), pp.e609. ⟨10.1212/NXG.0000000000000609⟩. ⟨hal-03582558⟩
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