Accès publications HAL
Chapitre d'ouvrage Identification of Protein Secretion Systems in Bacterial Genomes Using MacSyFinder Version 2 Sophie Abby, Rémi Denise, Eduardo P. C. Rocha
Bacterial Secretion Systems: methods and protocols [second edition], 2715, Springer, pp.1-25, 2024, Methods in Molecular Biology, 978-1-0716-3445-5 (eBook). ⟨10.1007/978-1-0716-3445-5_1⟩. ⟨hal-04886614⟩
Communication dans un congrès Bioinformatic analysis of the evolution of phototrophy in a bacterial clade: Pseudomonadota Timothée Salzat-Hervouette, Sophie Abby
Journées Origin of Life, Guillaume Chaverot; Margaux Jullien, Nov 2024, Saint-Martin-d'Hères, France. ⟨hal-04970898⟩
Article dans une revue Oropharyngeal tularemia outbreak linked to drinking contaminated tap water in North-Western Iran Parisa Esmaeili, Simin Khayatzadeh, Max Maurin, Mohammad Mehdi Gouya, Saber Esmaeili, Ehsan Mostafavi
Diagnostic Microbiology and Infectious Disease, 2024, 110 (3), pp.116478. ⟨10.1016/j.diagmicrobio.2024.116478⟩. ⟨hal-04997900⟩
Communication dans un congrès MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes Sophie S. Abby
Symposium GT-SFBBM Archaea 2024, Oct 2024, Gif-sur Yvette, France. ⟨hal-04985182⟩
Article dans une revue A global chromoblastomycosis strategy and development of the global chromoblastomycosis working group Dallas Smith, Flávio Queiroz-Telles, Fahafahantsoa Rapelanoro Rabenja, Roderick Hay, Alexandro Bonifaz, Marlous Grijsen, Romain Blaizot, Fernando Messina, Yinggai Song, Shawn Lockhart, Alexander Jordan, Alyson Cavanaugh, Anastasia Litvintseva, Tom Chiller, Marco Schito, Sybren de Hoog, Vania Aparecida Vicente, Muriel Cornet, Daniel Argaw Dagne, Lala Ramarozatovo, Conceição de Maria Pedrozo E Silva de Azevedo, Daniel Wagner C. L. Santos
PLoS Neglected Tropical Diseases, 2024, 18 (10), pp.e0012562. ⟨10.1371/journal.pntd.0012562⟩. ⟨hal-04997091⟩
Poster de conférence Hospital sink drains and wastewater are reservoirs for antibiotic resistant bacteria. Aurélie Hennebique, Jostin Monge-Ruiz, Morgane Roger-Margueritat, Patrice Morand, Claire Terreaux-Masson, Nadia Kurtz, Jennifer Charbonnier, Max Maurin, Corinne Mercier, Caroline Landelle, Elena Buelow
Microbes, Oct 2024, Lille, France. ⟨hal-04976951⟩
Communication dans un congrès Study of quinone exchanges in the gut microbiota Morgane Roger-Margueritat, Sophie-Carole Chobert, Audrey Le Gouellec, Sophie Abby, Fabien Pierrel
19ème congrès de la Société Française de Microbiologie (SFM), Oct 2024, Lille, France. ⟨hal-04985457⟩
Poster de conférence Evolution of resistance integrons and impact of bacterial lifestyle and antibiotic stress Morgane Maniveau, Hugo Mathe-Hubert, Aissata Fofana, Yohann Lacotte, Sandra Da Re, Thomas Hindré, Sophie Raherison
19e congrès national de la SFM, Oct 2024, Lille, France. ⟨hal-04942242⟩
Article dans une revue A Mouse Model of Mild Clostridioides difficile Infection for the Characterization of Natural Immune Responses Assaf Mizrahi, Gauthier Péan de Ponfilly, Diane Sapa, Antonia Suau, Irène Mangin, Aurélie Baliarda, Sandra Hoys, Benoît Pilmis, Sylvie Lambert, Anaïs Brosse, Alban Le Monnier
Microorganisms, 2024, 12 (10), pp.1933. ⟨10.3390/microorganisms12101933⟩. ⟨hal-04764178⟩
Article dans une revue DciA secures bidirectional replication initiation in Vibrio cholerae Amelie Besombes, Yazid Adam, Christophe Possoz, Ivan Junier, François–xavier Barre, Jean-Luc Ferat
ier Barre, et al.. DciA secures bidirectional replication initiation in Vibrio cholerae. Nucleic Acids Research, 2024, 52 (20), pp.12324 - 12333. ⟨10.1093/nar/gkae795⟩. ⟨hal-04778285⟩
Article dans une revue Easy-to-use imaging-cytometry assay to analyze chitin patterns in yeasts Delphine Aldebert, Bastien Suarez, François Bettega, Emilie Boucher, Cecile Garnaud, Muriel Cornet
Journal of Medical Mycology = Journal de Mycologie Médicale, 2024, 34 (3), pp.101493. ⟨10.1016/j.mycmed.2024.101493⟩. ⟨hal-04886599⟩
Article dans une revue Current knowledge and practice of Candida auris screening in France: A nationwide survey from the French Society of Medical Mycology (SFMM) J. Guitard, A.P. Bellanger, J. Dorin, S. Cassaing, A. Capitaine, F. Gabriel, M. Nicolas, N. Coron, P. Penn, M. Moniot, D. Quinio, S. Ranque, M. Sasso, P. Lepape, E. Dannaoui, S. Brun, C. Lacroix, M. Cornu, A. Debourgogne, M.F. Durieux, G. Laurent, V. Bru, N. Bourgeois, Kévin Brunet, K. Brunet, T. Chouaki, A. Huguenin, L. Hasseine, D. Maubon, J.P. Gangneux, N. Desbois-Nogard, S. Houze, F. Dalle, M.E. Bougnoux, A. Alanio, D. Costa, F. Botterel, C. Hennequin
Journal of Medical Mycology = Journal de Mycologie Médicale, 2024, 34 (3), pp.101490. ⟨10.1016/j.mycmed.2024.101490⟩. ⟨hal-04675511⟩
Logiciel MacSyFinder Bertrand Néron, Sophie Abby, Eduardo Rocha
2024, ⟨swh:1:dir:a33618de0c3738daa75c2b1bc3e302df450a3987;origin=https://github.com/gem-pasteur/macsyfinder;visit=swh:1:snp:c8f689b846b5ddaff789ace1e17a2e6ad56e6d0e;anchor=swh:1:rel:2371db752dab111a56fe281675e7176c4da9983d⟩. ⟨hal-04668349v3⟩
Article dans une revue The Epidemiological Investigation of Yersinia pestis , Francisella tularensis , and Arenavirus Infections in Small Mammals in Northwestern Iran Ehsan Mostafavi, Roya Mohammadpour, Saber Esmaeili, Ahmad Mahmoudi, Mostafa Salehi-Vaziri, Ahmad Ghasemi, Mahdi Rohani, Ali Mohammadi, Sana Eybpoosh, Neda Baseri, Christiane Denys, Max Maurin, Violaine Nicolas, Aude Lalis, Jean-Pierre Hugot
Vector Borne and Zoonotic Diseases, 2024, 24 (8), pp.489-498. ⟨10.1089/vbz.2023.0089⟩. ⟨hal-04677672⟩
Article dans une revue Azole resistance in Aspergillus flavus and associated fitness cost Elie Djenontin, Anne Debourgogne, Bita Mousavi, Laurence Delhaes, Muriel Cornet, Isabel Valsecchi, Makiath Adebo, Jacques Guillot, Françoise Botterel, Eric Dannaoui
Mycoses, 2024, 67 (7), pp.2169. ⟨10.1111/myc.13766⟩. ⟨hal-04997696⟩
HDR Immunothérapie des Cancers : Décryptage des mécanismes d’actions et Identification de biomarqueurs pour maximiser les réponses aux traitements Dalil Hannani
Immunologie. UGA (Université Grenoble Alpes), 2024. ⟨tel-04753901⟩
Poster de conférence PREDICTING BACTERIAL SECRETION SYSTEM PROTEINS USING POSITIVE AND UNLABELED MACHINE LEARNING Sandy Frank, Kwamou Ngaha, Renato Augusto Antoniassi Battistin, Sophie Abby, Nelle Varoquaux
JOBIM 2024, Jun 2024, Toulouse, France. ⟨hal-04975216⟩
Article dans une revue An ethically guided preclinical device for phenotyping H2 production in laboratory rodents Victor Pascal-Moussellard, Emilie Boucher, Stéphane Tanguy, Philippe Cinquin, Pierre‐alain Barraud, Chloé Davin, Cordélia Salomez-Ihl, Dalil Hannani, François Boucher, Jean‐pierre Alcaraz
Animal Model Exp Med / Animal models and experimental medicine., 2024, ⟨10.1002/ame2.12460⟩. ⟨hal-04634474⟩
Poster de conférence Development of a sdAb based radiotracer targeting murine Tissue Factor for atherothrombosis imaging Laurent Dumas, Charlotte Lombardi, Charlotte Lombardi, Timo W M de Groof, Florian Raes, Mitra Ahmadi, Seyve Landry, Sandrine Bacot, Clémence André, Marlène Debiossat, Raphaël Marlu, Jean-Luc Lenormand, Sophie Hernot, Daniel Fagret, Nick Devoogdt, Catherine Ghezzi, Alexis Broisat
lopment of a sdAb based radiotracer targeting murine Tissue Factor for atherothrombosis imaging. Journée de la Recherche Médicale de Grenoble, Jun 2024, Grenoble, France. ⟨hal-05290749⟩
Poster de conférence Long bacterial cell" phenotype in the Long-Term Evolution Experiment (LTEE) on Escherichia coli Koçak Arif, Monge-Ruiz Jostin, Antar Hammam M., Efilé-Lukumba Frémis, Aldebert Delphine, Hennebique Aurélie, Schaack Béatrice, Laurin David, Usson Yves, Maurin Max, Yamaryo-Botté Yoshiki, Jouhet Juliette, Botté Cyrille Y., Schneider Dominique, Hindré Thomas, Mercier Corinne
BactoGre 2024, Jun 2024, Saint-Martin d'Hères, France. ⟨hal-04977297⟩
Accès publications HAL